| Definition | Clostridium difficile 630 chromosome, complete genome. |
|---|---|
| Accession | NC_009089 |
| Length | 4,290,252 |
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The map label for this gene is 126697987
Identifier: 126697987
GI number: 126697987
Start: 486717
End: 487106
Strand: Direct
Name: 126697987
Synonym: CD0417
Alternate gene names: NA
Gene position: 486717-487106 (Clockwise)
Preceding gene: 126697986
Following gene: 126697988
Centisome position: 11.34
GC content: 36.15
Gene sequence:
>390_bases ATGGCATATGTACCAATCCCTAAAGACTTAAATAGGGTAAAGACAAAGGTTGCTTTTAACCTAACGAAAAGGCAGCTCAT AGGCTTCACACTTGCAGGACTGGTTGGAATACCAGTCTATTTATTTATAAGGAAGTTTGTGCCAAATGACATAGCTGTCA TATTCCTTATCGTGTCCACGCTTCCTATCTTTTTCATCACACTATTTGAAAAGGACGGACTGACCTTTGAGAAATATTTT AAGCACATTTACCTTCATAAGTTTTATCAGCCAAAAAAGAGAGTGAGAAAGGAGGTTTACCTTGAACAAGAAAAGAAAAA TTCAGCAAATAAAACTCATGCAAAACGAAAAGGCATTGAGAAGTCAAAAGCGGGACTTAAAGAAAAGTAA
Upstream 100 bases:
>100_bases GAACACAGACGAACAGCTTGCGACTATTCAGGAAGAAATCGGCTCTGTATATGAACACTTTGAGGAGCTGTCAAAGGGTA AAGAAGATGGGAGGTAAGAT
Downstream 100 bases:
>100_bases TTGCAAGTCAAAAAAAGATAAGGGAGGAATCCTTGACCTTATCTTTAAGAAAGAACCGAAAAGATATACGGTAGAAGATA CCATTCCCTATCTAAGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MAYVPIPKDLNRVKTKVAFNLTKRQLIGFTLAGLVGIPVYLFIRKFVPNDIAVIFLIVSTLPIFFITLFEKDGLTFEKYF KHIYLHKFYQPKKRVRKEVYLEQEKKNSANKTHAKRKGIEKSKAGLKEK
Sequences:
>Translated_129_residues MAYVPIPKDLNRVKTKVAFNLTKRQLIGFTLAGLVGIPVYLFIRKFVPNDIAVIFLIVSTLPIFFITLFEKDGLTFEKYF KHIYLHKFYQPKKRVRKEVYLEQEKKNSANKTHAKRKGIEKSKAGLKEK >Mature_128_residues AYVPIPKDLNRVKTKVAFNLTKRQLIGFTLAGLVGIPVYLFIRKFVPNDIAVIFLIVSTLPIFFITLFEKDGLTFEKYFK HIYLHKFYQPKKRVRKEVYLEQEKKNSANKTHAKRKGIEKSKAGLKEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15090; Mature: 14959
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYVPIPKDLNRVKTKVAFNLTKRQLIGFTLAGLVGIPVYLFIRKFVPNDIAVIFLIVST CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LPIFFITLFEKDGLTFEKYFKHIYLHKFYQPKKRVRKEVYLEQEKKNSANKTHAKRKGIE HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH KSKAGLKEK HHHCCCCCC >Mature Secondary Structure AYVPIPKDLNRVKTKVAFNLTKRQLIGFTLAGLVGIPVYLFIRKFVPNDIAVIFLIVST CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LPIFFITLFEKDGLTFEKYFKHIYLHKFYQPKKRVRKEVYLEQEKKNSANKTHAKRKGIE HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCH KSKAGLKEK HHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA