Click here to switch to the map view.

The map label for this gene is rbsR [H]

Identifier: 126697870

GI number: 126697870

Start: 359082

End: 360104

Strand: Direct

Name: rbsR [H]

Synonym: CD0298

Alternate gene names: 126697870

Gene position: 359082-360104 (Clockwise)

Preceding gene: 126697869

Following gene: 126697871

Centisome position: 8.37

GC content: 28.54

Gene sequence:

>1023_bases
GTGAACTTCTTGAGTATAACTATAAAAGAAATTGGCGAATTGGCTGGTGTTTCTAAAACAACTGTGTCAAAAGTCATTAA
TAATAAAGATGAAAATATAAGTCAGGCAACAAGAGAAAAAATTTTGAAAATAATGAAGGAAAAAAATTATGTACCAAATA
AATTAGCACAAAGTTTAGTAACTAAAAAAACTAATACTATAGGGCTTCTTATACCAGATATACGAAATCCATTCTTTACA
GATGTATCAAGAGGTGTAGAAGACAAAGCTAATGAAGAAGGCTACAATATAATTTTATGTAATACAGATGAAGATGCTAA
AAAAGAATATGAAGGAATAAGAACACTATCAGAGAGGATGATAGATGGAATTATATTTGCAGCATCTTCAAATACAAACT
GGAAAGAAGCAAATTATAAAGATATAAAAATACCAACTGTCTTGATTGATAAGAAGATAAGTATGAACAAAGAAACCTTA
AAAGGAATTGTTAAAATAAATAACTTTGAAGGGGCCTATATAGCTACAAAACATTTATTAGATATTGGAAATAAGAAAAT
AATATACCTAAGTGGTCCACTTCAAAATGAAATAGCAGTAGATAGATTAGAAGGATATAAAAAGGCTCTAATCGAGTGCA
ATTTAAGCTACAATCCTGCTTATGTATTTGAAGGAAAATATAAGATTGAATGGGGACAAGAATTTATAAAAAATTTAGAA
AAGATAGATTTTGATGCAATATTTTGTGCAAATGATTTGATTGCAATAGGTGTCATAAGAGGTCTTAAAGAAAGAGGATT
AAGTATACCAAATGATATAAGTGTCGTGGGATTTGATGATATTCAAACATCAAGTCTAATAAGCCCTTCTCTTACCACAG
TAAAACAGCCGTCTTATGATATAGGATATAAAGCCAGTGAAATATTGATAAATTGTTTAAGAGGAGATAAAAAAGAATCG
TTTGATGAATTGATTTTCAAACCAGAATTAGTCATAAGAGATTCAACAAAAGAAAGTGAATAA

Upstream 100 bases:

>100_bases
GGAAAAATATCAAAATTTATATAAAATGGTTGCAAATGGAAAAAAGATGTGATAGTATCTAGGTAACCGGTTAAGTAAAA
CGGTTTCCTAAATTTTGGGG

Downstream 100 bases:

>100_bases
CAGCACGAGAGACATAAATAGATATGTAAAGGAGTAATGTAATGGGAAACATAGTTGTCATAGGAAGTGTAAACATGGAC
ATGGTATGTTCTGTAGATAA

Product: ribose operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MNFLSITIKEIGELAGVSKTTVSKVINNKDENISQATREKILKIMKEKNYVPNKLAQSLVTKKTNTIGLLIPDIRNPFFT
DVSRGVEDKANEEGYNIILCNTDEDAKKEYEGIRTLSERMIDGIIFAASSNTNWKEANYKDIKIPTVLIDKKISMNKETL
KGIVKINNFEGAYIATKHLLDIGNKKIIYLSGPLQNEIAVDRLEGYKKALIECNLSYNPAYVFEGKYKIEWGQEFIKNLE
KIDFDAIFCANDLIAIGVIRGLKERGLSIPNDISVVGFDDIQTSSLISPSLTTVKQPSYDIGYKASEILINCLRGDKKES
FDELIFKPELVIRDSTKESE

Sequences:

>Translated_340_residues
MNFLSITIKEIGELAGVSKTTVSKVINNKDENISQATREKILKIMKEKNYVPNKLAQSLVTKKTNTIGLLIPDIRNPFFT
DVSRGVEDKANEEGYNIILCNTDEDAKKEYEGIRTLSERMIDGIIFAASSNTNWKEANYKDIKIPTVLIDKKISMNKETL
KGIVKINNFEGAYIATKHLLDIGNKKIIYLSGPLQNEIAVDRLEGYKKALIECNLSYNPAYVFEGKYKIEWGQEFIKNLE
KIDFDAIFCANDLIAIGVIRGLKERGLSIPNDISVVGFDDIQTSSLISPSLTTVKQPSYDIGYKASEILINCLRGDKKES
FDELIFKPELVIRDSTKESE
>Mature_340_residues
MNFLSITIKEIGELAGVSKTTVSKVINNKDENISQATREKILKIMKEKNYVPNKLAQSLVTKKTNTIGLLIPDIRNPFFT
DVSRGVEDKANEEGYNIILCNTDEDAKKEYEGIRTLSERMIDGIIFAASSNTNWKEANYKDIKIPTVLIDKKISMNKETL
KGIVKINNFEGAYIATKHLLDIGNKKIIYLSGPLQNEIAVDRLEGYKKALIECNLSYNPAYVFEGKYKIEWGQEFIKNLE
KIDFDAIFCANDLIAIGVIRGLKERGLSIPNDISVVGFDDIQTSSLISPSLTTVKQPSYDIGYKASEILINCLRGDKKES
FDELIFKPELVIRDSTKESE

Specific function: Involved in the regulation of amylase production [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=308, Percent_Identity=35.3896103896104, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1790369, Length=337, Percent_Identity=30.2670623145401, Blast_Score=185, Evalue=3e-48,
Organism=Escherichia coli, GI1787948, Length=335, Percent_Identity=28.955223880597, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1788474, Length=340, Percent_Identity=30.5882352941176, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1789202, Length=333, Percent_Identity=30.9309309309309, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1787580, Length=321, Percent_Identity=29.9065420560748, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1790715, Length=312, Percent_Identity=31.4102564102564, Blast_Score=151, Evalue=8e-38,
Organism=Escherichia coli, GI1789068, Length=296, Percent_Identity=28.3783783783784, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI48994940, Length=312, Percent_Identity=28.525641025641, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1786540, Length=320, Percent_Identity=28.125, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786268, Length=321, Percent_Identity=25.8566978193146, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1787906, Length=309, Percent_Identity=24.2718446601942, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789456, Length=354, Percent_Identity=25.9887005649718, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790689, Length=315, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790192, Length=274, Percent_Identity=27.7372262773723, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38281; Mature: 38281

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFLSITIKEIGELAGVSKTTVSKVINNKDENISQATREKILKIMKEKNYVPNKLAQSLV
CCEEEEEHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
TKKTNTIGLLIPDIRNPFFTDVSRGVEDKANEEGYNIILCNTDEDAKKEYEGIRTLSERM
HHCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
IDGIIFAASSNTNWKEANYKDIKIPTVLIDKKISMNKETLKGIVKINNFEGAYIATKHLL
HCEEEEEECCCCCCCCCCCCEEECCEEEECCCCCCCHHHHEEEEEEECCCCCHHHHHHHH
DIGNKKIIYLSGPLQNEIAVDRLEGYKKALIECNLSYNPAYVFEGKYKIEWGQEFIKNLE
HCCCCEEEEEECCCCCHHHHHHHHHHHEEHEEECCCCCCEEEECCEEEEHHHHHHHHHHH
KIDFDAIFCANDLIAIGVIRGLKERGLSIPNDISVVGFDDIQTSSLISPSLTTVKQPSYD
HCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCCCC
IGYKASEILINCLRGDKKESFDELIFKPELVIRDSTKESE
CCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure
MNFLSITIKEIGELAGVSKTTVSKVINNKDENISQATREKILKIMKEKNYVPNKLAQSLV
CCEEEEEHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
TKKTNTIGLLIPDIRNPFFTDVSRGVEDKANEEGYNIILCNTDEDAKKEYEGIRTLSERM
HHCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
IDGIIFAASSNTNWKEANYKDIKIPTVLIDKKISMNKETLKGIVKINNFEGAYIATKHLL
HCEEEEEECCCCCCCCCCCCEEECCEEEECCCCCCCHHHHEEEEEEECCCCCHHHHHHHH
DIGNKKIIYLSGPLQNEIAVDRLEGYKKALIECNLSYNPAYVFEGKYKIEWGQEFIKNLE
HCCCCEEEEEECCCCCHHHHHHHHHHHEEHEEECCCCCCEEEECCEEEEHHHHHHHHHHH
KIDFDAIFCANDLIAIGVIRGLKERGLSIPNDISVVGFDDIQTSSLISPSLTTVKQPSYD
HCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCCCC
IGYKASEILINCLRGDKKESFDELIFKPELVIRDSTKESE
CCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]