Definition Clostridium difficile 630 chromosome, complete genome.
Accession NC_009089
Length 4,290,252

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The map label for this gene is 126697858

Identifier: 126697858

GI number: 126697858

Start: 347642

End: 348043

Strand: Direct

Name: 126697858

Synonym: CD0286

Alternate gene names: NA

Gene position: 347642-348043 (Clockwise)

Preceding gene: 126697857

Following gene: 126697859

Centisome position: 8.1

GC content: 27.61

Gene sequence:

>402_bases
ATGAATAAATATAAGGTAATCATACTGTGCCATGGAACTTGGGGAAAAGTCTTAGTAGAAGAAACAAATAAAAACTTTGG
ATTGTCAAATCAATATGAAGTTTTATCACTAAGTTCTGAAAAAGATGTTTCTGTATTTATGAAAGAGGTTGAAGAAGTAG
TAGATAAAGAAGATGTGAAAATTATAATATCAGATTTATATGGAGGATCTACATCAAGTGTCGCAATAGCTGTTGCTATA
AGAAGAGGAATAGATGCAATAAATGGACTTAGCTTACAGACAATTTTAATCGTAGATGAAGAATTAAGCAAAGAAGATAA
ATTACATACATTACCAGAAAGAATCGTCAAAAAAAATAATAACCTTTGTGTGGATTTAATTAAAGAATTTAAAAAAATAT
AA

Upstream 100 bases:

>100_bases
TTAAAAAGAATATTAATGTATCAATTCAAATGGTACCTGATGAAGAAGAAGTAGAATTAAACCAAAATATTAATCGCTAT
AAAGGAGAGTTTATTTAGCA

Downstream 100 bases:

>100_bases
ATTATGAGGTGAATATAATGGCAAAAATAACATTAGTAAGAGTAGACCACAGATTAATTCATGGGCAAGTTATAACAAAA
TGGGTAAAAATCGCTCAAGC

Product: PTS system transporter subunit IIA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MNKYKVIILCHGTWGKVLVEETNKNFGLSNQYEVLSLSSEKDVSVFMKEVEEVVDKEDVKIIISDLYGGSTSSVAIAVAI
RRGIDAINGLSLQTILIVDEELSKEDKLHTLPERIVKKNNNLCVDLIKEFKKI

Sequences:

>Translated_133_residues
MNKYKVIILCHGTWGKVLVEETNKNFGLSNQYEVLSLSSEKDVSVFMKEVEEVVDKEDVKIIISDLYGGSTSSVAIAVAI
RRGIDAINGLSLQTILIVDEELSKEDKLHTLPERIVKKNNNLCVDLIKEFKKI
>Mature_133_residues
MNKYKVIILCHGTWGKVLVEETNKNFGLSNQYEVLSLSSEKDVSVFMKEVEEVVDKEDVKIIISDLYGGSTSSVAIAVAI
RRGIDAINGLSLQTILIVDEELSKEDKLHTLPERIVKKNNNLCVDLIKEFKKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14938; Mature: 14938

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS51096 PTS_EIIA_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYKVIILCHGTWGKVLVEETNKNFGLSNQYEVLSLSSEKDVSVFMKEVEEVVDKEDVK
CCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCE
IIISDLYGGSTSSVAIAVAIRRGIDAINGLSLQTILIVDEELSKEDKLHTLPERIVKKNN
EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCC
NLCVDLIKEFKKI
CCHHHHHHHHHCC
>Mature Secondary Structure
MNKYKVIILCHGTWGKVLVEETNKNFGLSNQYEVLSLSSEKDVSVFMKEVEEVVDKEDVK
CCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCE
IIISDLYGGSTSSVAIAVAIRRGIDAINGLSLQTILIVDEELSKEDKLHTLPERIVKKNN
EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCC
NLCVDLIKEFKKI
CCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA