Click here to switch to the map view.

The map label for this gene is fliN [C]

Identifier: 126697799

GI number: 126697799

Start: 294131

End: 294445

Strand: Direct

Name: fliN [C]

Synonym: CD0228

Alternate gene names: 126697799

Gene position: 294131-294445 (Clockwise)

Preceding gene: 126697798

Following gene: 126697800

Centisome position: 6.86

GC content: 23.49

Gene sequence:

>315_bases
ATGAATAGCAAAAAAGAAGATATATATGAATTGAATTTTGGTCAATTAATAGAAGAAAAGACTGGGATTATAGAGGAAAA
TCAAAATGTTTTTAATGCTAAAGTAAATGTGGCTGTTTCTATAGGAAACATAACAGAAACAATAAAAAATATATTAGATT
TAAAAGAAGGTTCTATAATAAAACTAAATAAGAATGTAGATGAAAAATTAGACATATATGCAAATGACAGATTGTTTGCT
TATGGAGAAAGTATTATTACAAATGAAACATTATCTGTAAGATTATCTAAAATAGAAGATTCAGACGTAAATTAA

Upstream 100 bases:

>100_bases
ATGAAGAAAAAGAAAATATAGATATTGTTTCTACTGTTGATATGATACAAGGCTTATTGATAGATATGTATAGATAAGAT
TACATAAGGAGAATAGTTTT

Downstream 100 bases:

>100_bases
TACTTTAAAAAATATCCCCTTAGATTATTCTATATTGGTTTAATCAAGGGGTATTTTTATAAAAAATTTAAAATCTATTT
GAATCGTATAAATATTTTTC

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MNSKKEDIYELNFGQLIEEKTGIIEENQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFA
YGESIITNETLSVRLSKIEDSDVN

Sequences:

>Translated_104_residues
MNSKKEDIYELNFGQLIEEKTGIIEENQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFA
YGESIITNETLSVRLSKIEDSDVN
>Mature_104_residues
MNSKKEDIYELNFGQLIEEKTGIIEENQNVFNAKVNVAVSIGNITETIKNILDLKEGSIIKLNKNVDEKLDIYANDRLFA
YGESIITNETLSVRLSKIEDSDVN

Specific function: Flin Is One Of Three Proteins (Flig, Flin, Flim) That Form A Switch Complex That Is Proposed To Be Located At The Base Of The Basal Body. This Complex Interacts With The Chey And Chez Chemotaxis Proteins, In Addition To Contacting Components Of The Motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11750; Mature: 11750

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSKKEDIYELNFGQLIEEKTGIIEENQNVFNAKVNVAVSIGNITETIKNILDLKEGSII
CCCCCCCEEECCHHHHHHHHCCCEECCCCEEEEEEEEEEEECCHHHHHHHHHCCCCCCEE
KLNKNVDEKLDIYANDRLFAYGESIITNETLSVRLSKIEDSDVN
EECCCCCCEEEEEECCEEEEECCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MNSKKEDIYELNFGQLIEEKTGIIEENQNVFNAKVNVAVSIGNITETIKNILDLKEGSII
CCCCCCCEEECCHHHHHHHHCCCEECCCCEEEEEEEEEEEECCHHHHHHHHHCCCCCCEE
KLNKNVDEKLDIYANDRLFAYGESIITNETLSVRLSKIEDSDVN
EECCCCCCEEEEEECCEEEEECCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA