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The map label for this gene is ybaF [H]

Identifier: 126697673

GI number: 126697673

Start: 120122

End: 120925

Strand: Direct

Name: ybaF [H]

Synonym: CD0102

Alternate gene names: 126697673

Gene position: 120122-120925 (Clockwise)

Preceding gene: 126697672

Following gene: 126697674

Centisome position: 2.8

GC content: 30.72

Gene sequence:

>804_bases
ATGTTAAAAGATATAACTATAGGGCAATACTACCCAACAAGTTCTGCTATTCATAAATTAGATCCAAGGATAAAGCTTGT
AGCGACAATTGTATTTATGGTATCTATATTTGTAGTAAATAAATTTTGGCCTTATATAGTAGTTTTATTATGTTTATTAG
CTATGATAAAATTGGCTAATATACCAGTCAAATATATTGTTAAGGGTGTTAAACCTCTTAAATGGATTATTTTGTTTACA
TTTCTTATAAATATTTTTTTCTTACCAGGTGATGAAATATGGTCATTTGGATTTTTAGCTATTACAAAACAGGGTCTAAG
ACAAGCAATTTTTATGGCAATAAGATTAATATTTTTAGTAGTTGGTACATCATTGCTTACTTTAACAACTTCACCAATAG
AATTAACTGATGGAATAGAGAGATTGTTGAATCCATTTAAGAAAATTGGTTTGCCAGTTCATGAACTTGCAATGATGATG
ACAATTGCTTTACGTTTTATTCCTACATTGTTAGATGAGACAGACAAAATAATGAAGGCTCAGATGTCTAGAGGTGCAGA
TTTTGAAAGTAAGAATCTTATAAATAGAGCAAAGAATTTAGTACCACTTTTGGTACCTTTATTTGTAAGTGCATTTAGAA
GAGCTGATGAATTGGCTATGGCCATGGAGGCCAGATGTTACAGAGGTGGACATAATAGGACTAAGATGAGAGAGTCTGTT
ATATCAAGAAGGGATTATATGGCATGTGTATTTCAGCTTGTTTATCTGGGAGCAATTATAGCTACTAGATTTATAGCAAT
TTAA

Upstream 100 bases:

>100_bases
CATTGAAATTGAGAGAAAAAGGCTTTGACATCAGTGAGGATATATTGACTTTAGAAGAAGCAAAACAGGAAATATTAAAA
GTTGTGAGAGGACGAGGATT

Downstream 100 bases:

>100_bases
TTAATAAGTTATAGATATAATGAGGTAAAGTATGAGAAATATAAAAATTAAAATCCAATACAATGGTAAGAATTATTGTG
GATGGCAAAAGCAACCTGAT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFT
FLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMM
TIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESV
ISRRDYMACVFQLVYLGAIIATRFIAI

Sequences:

>Translated_267_residues
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFT
FLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMM
TIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESV
ISRRDYMACVFQLVYLGAIIATRFIAI
>Mature_267_residues
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLANIPVKYIVKGVKPLKWIILFT
FLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLVVGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMM
TIALRFIPTLLDETDKIMKAQMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESV
ISRRDYMACVFQLVYLGAIIATRFIAI

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30393; Mature: 30393

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLAN
CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLV
CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMMTIALRFIPTLLDETDKIMKA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ISRRDYMACVFQLVYLGAIIATRFIAI
HHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKDITIGQYYPTSSAIHKLDPRIKLVATIVFMVSIFVVNKFWPYIVVLLCLLAMIKLAN
CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPVKYIVKGVKPLKWIILFTFLINIFFLPGDEIWSFGFLAITKQGLRQAIFMAIRLIFLV
CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGTSLLTLTTSPIELTDGIERLLNPFKKIGLPVHELAMMMTIALRFIPTLLDETDKIMKA
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMSRGADFESKNLINRAKNLVPLLVPLFVSAFRRADELAMAMEARCYRGGHNRTKMRESV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ISRRDYMACVFQLVYLGAIIATRFIAI
HHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]