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The map label for this gene is dnaB [H]

Identifier: 126697202

GI number: 126697202

Start: 1590187

End: 1591569

Strand: Direct

Name: dnaB [H]

Synonym: P9301_18641

Alternate gene names: 126697202

Gene position: 1590187-1591569 (Clockwise)

Preceding gene: 126697201

Following gene: 126697203

Centisome position: 96.85

GC content: 35.0

Gene sequence:

>1383_bases
ATGGTTTCCGTACCTTTTCCAAATAATGGGCAAAATAAAAATTTTAAAAAGGATTTTAATAGTGAAAATGCTGGATTAGT
TCCTCCTCAAAACGTTCAAGCAGAGGAAGCTGTTCTTGGTGGCATACTTCTTGATCCAGACGCGATCGGAAGAATTGCAG
ACTTAATTAAACCTGAAGCTTTTTATATAAATGCCCATCAAGAGATTTATAGAACAGCATTAATGTTGCATACCCAGGGT
AAACCAACTGATTTAACATCAATGAGTGCTTGGTTAGCAGATAATGGATCACTAGAAAAAATTGGAGGAAACAGCAAACT
GGTAGAACTAGTTGAAAATGTTTCCTCTACAGCTTCCATAGAACAAGTTGCTAATTTAATTAACGACAAATTCCTGAGAA
GGCAACTTATCAGATCTGGAAATGAAGTGGTTCAACTAGGTTTTGATCAAACTCAAGATACTAATGAAGTTTTAGATAAA
GCAGAGCAAAAAATATTTGAAATCAGTCAAGAAAAACCTTCAAAAGGTCTGACTCAAGCAGCTGAAATCCTTACAAGTAC
TTTCAATGAAATAGAGTCAAGATCATTAGGTACTTCAGTAGCTGGTATTCCAGTAAATTTCTACGACCTTGATGCGATGA
CTCAAGGTTTTCAAAGAAGTGATTTAATAATTGTTGCTGGAAGACCTTCAATGGGGAAAACTTCAATAGTTCTTAATCTG
GCTAAAAATGTTGCACAATCGCAAGATTTACCTGTGTGTGTATTTAGCCTTGAAATGAGTAAAGAACAATTGACATATAG
ATTGCTCTCTATGGAAGTTGGAATCGAGAGTGGCAGGCTAAGAACAGGAAGATTACAGCAAGATGAATGGCCATTACTCG
GAGAAGGTATCAATTCATTAGGTCAATTACCAATATTTATAGATGACAAGCCTAACTTAAGTGTTTTAGAGATGAGATCT
CTGTGCAGAAGATTAATAGCTGAACAAAAAAAAGAACTTGGATTAATTGTGATTGATTACCTCCAGTTGATGGAGGGATC
AACCCCTGATAATAGAGTGCAAGAACTTTCACGAATAACAAGAGGTCTTAAAAGCATGGCCAGAGAATTAAAAGTACCAG
TAGTAGCTTTATCTCAGCTTAGTAGAGGGGTAGAGTCTAGAACAAATAAAAGACCAATGTTAAGCGATCTAAGAGAATCA
GGATCTATTGAACAAGACGCAGATTTAGTATTAATGATTTATAGAGATGAATACTATAATCCAGAGACTGAAGATAGAGG
AATTACAGAAATCATTGTCACTAAACATAGAAATGGACCCGTAGGAACTGTTAAATTATTATTTGAACCTCAATTTACTA
GATTTAGGAATTTAGCTAATTAA

Upstream 100 bases:

>100_bases
CAGAAGTAAATGCAGAAGTAAATATTGAAGTAACAAGTTAATCAATTTGTTGCATTATTTTGAAAAGTAGCCAGAGTATA
TATCTAAGCAATTCAAAGAT

Downstream 100 bases:

>100_bases
ATCGATCCTAAAATGCAAGATCATCACTCAACAAATGAATCTTTTGATGTCATCGTTATTGGTGGTGGACATGCAGGATG
CGAAGCAGCCATAACAACAG

Product: DnaB replicative helicase

Products: NA

Alternate protein names: Asp dnaB intein [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEAFYINAHQEIYRTALMLHTQG
KPTDLTSMSAWLADNGSLEKIGGNSKLVELVENVSSTASIEQVANLINDKFLRRQLIRSGNEVVQLGFDQTQDTNEVLDK
AEQKIFEISQEKPSKGLTQAAEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL
AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQDEWPLLGEGINSLGQLPIFIDDKPNLSVLEMRS
LCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRITRGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRES
GSIEQDADLVLMIYRDEYYNPETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN

Sequences:

>Translated_460_residues
MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEAFYINAHQEIYRTALMLHTQG
KPTDLTSMSAWLADNGSLEKIGGNSKLVELVENVSSTASIEQVANLINDKFLRRQLIRSGNEVVQLGFDQTQDTNEVLDK
AEQKIFEISQEKPSKGLTQAAEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL
AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQDEWPLLGEGINSLGQLPIFIDDKPNLSVLEMRS
LCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRITRGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRES
GSIEQDADLVLMIYRDEYYNPETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN
>Mature_460_residues
MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEAFYINAHQEIYRTALMLHTQG
KPTDLTSMSAWLADNGSLEKIGGNSKLVELVENVSSTASIEQVANLINDKFLRRQLIRSGNEVVQLGFDQTQDTNEVLDK
AEQKIFEISQEKPSKGLTQAAEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL
AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQDEWPLLGEGINSLGQLPIFIDDKPNLSVLEMRS
LCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRITRGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRES
GSIEQDADLVLMIYRDEYYNPETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN

Specific function: The intein is an endonuclease (Potential) [H]

COG id: COG0305

COG function: function code L; Replicative DNA helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SF4 helicase domain [H]

Homologues:

Organism=Escherichia coli, GI1790486, Length=462, Percent_Identity=42.2077922077922, Blast_Score=351, Evalue=5e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007692
- InterPro:   IPR007694
- InterPro:   IPR007693
- InterPro:   IPR016136
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141 [H]

Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 51250; Mature: 51250

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEA
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECHHHHHHHHHHHCCCE
FYINAHQEIYRTALMLHTQGKPTDLTSMSAWLADNGSLEKIGGNSKLVELVENVSSTASI
EEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHH
EQVANLINDKFLRRQLIRSGNEVVQLGFDQTQDTNEVLDKAEQKIFEISQEKPSKGLTQA
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
AEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQDEWPLLGEGINSL
HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
GQLPIFIDDKPNLSVLEMRSLCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRIT
CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHH
RGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRESGSIEQDADLVLMIYRDEYYN
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC
PETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN
CCCCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHCCCC
>Mature Secondary Structure
MVSVPFPNNGQNKNFKKDFNSENAGLVPPQNVQAEEAVLGGILLDPDAIGRIADLIKPEA
CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEECHHHHHHHHHHHCCCE
FYINAHQEIYRTALMLHTQGKPTDLTSMSAWLADNGSLEKIGGNSKLVELVENVSSTASI
EEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHH
EQVANLINDKFLRRQLIRSGNEVVQLGFDQTQDTNEVLDKAEQKIFEISQEKPSKGLTQA
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
AEILTSTFNEIESRSLGTSVAGIPVNFYDLDAMTQGFQRSDLIIVAGRPSMGKTSIVLNL
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
AKNVAQSQDLPVCVFSLEMSKEQLTYRLLSMEVGIESGRLRTGRLQQDEWPLLGEGINSL
HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
GQLPIFIDDKPNLSVLEMRSLCRRLIAEQKKELGLIVIDYLQLMEGSTPDNRVQELSRIT
CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHH
RGLKSMARELKVPVVALSQLSRGVESRTNKRPMLSDLRESGSIEQDADLVLMIYRDEYYN
HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCC
PETEDRGITEIIVTKHRNGPVGTVKLLFEPQFTRFRNLAN
CCCCCCCCEEEEEEECCCCCCEEEEEEECCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]