Click here to switch to the map view.

The map label for this gene is 126697095

Identifier: 126697095

GI number: 126697095

Start: 1478752

End: 1480257

Strand: Reverse

Name: 126697095

Synonym: P9301_17571

Alternate gene names: NA

Gene position: 1480257-1478752 (Counterclockwise)

Preceding gene: 126697097

Following gene: 126697093

Centisome position: 90.16

GC content: 32.87

Gene sequence:

>1506_bases
ATGAGAAATTCCGAAGTTATTGTTGTTGGCGCGGGTATAGCAGGATTAACTTCTGCTGCGATTTTATCAAAACAAGGTTT
ATCAGTTAATTTAATCGAATCTCATACTCAATCAGGAGGATGTGCAGGTACTTTCAAAAGAAAAAATTATATTTTTGATG
TTGGTGCAACTCAAGTTGCGGGTTTAGAGAAAGGAGGAATACATTCGAGAATTTTTAATTTTTTAGATATTCCATCTCCT
GAAGCGACAATTTTAGATCCTGCTTGCATAGTTGATTTAAATGATGGAGGTAAGCCCATACCTATTTGGTATGAAAAAAG
TAAATGGATTGCTGAACAAGAAATGCAGTTTCCAGGGAGTGGTAAATTTTGGAAGCTTTGTGCTCTCATTCATCAAAGTA
ATTGGATATTTGCCAACAATAATCCTGTATTACCAGTAAGTAATTTTTGGGATTTTTCTCAACTTCTTAAAGCACTAGTA
CCGTCGAATCTCGTCACAGGTATCTTACTAAAATCAACTATTTTTGATTTGTTGCGAATATGTGGATTATCCAATAATGA
GCGCTTGATAAAATTCTTAAATCTTCAATTAAAACTTTATTCTCAAGAGGACGTTCATAATACAGCCGCATTATATGGAT
CTACTGTTCTTCAAATGTGTCAACAGCCACATGGTCTGTGGCATCTTAAAAAATCTATGCAGTCTTTAAGTGAATCATTA
GAAAGTTCATTGAGGAAAACTGAAGCTAATCTAATTTTTGGACAAAAAGTTAATTCTATAAATTTTGATGAGGAAAATAT
GTGTTGGAAAGTATCTGCTAATTCGAAAAAAAAATCTTTTATTTACCAAGCAAAAGATTTGATTTATACCGCGCCTCCAC
AATCTTTGCTCAATCATTTGAAAGATCCTTTAAAAAGAAAAAAGAAGTATCAAAATCGAATCAATAATTTGCCTGATCCA
AGTGGAGCTGTAGTTTTTTATTCAGCATTAAAAAGAGAACATATTAAAAAAACTTTCTCCAATCATTATCAATTTGTGTC
CAAAGAATTTACTTCGGTATTTGTATCTATTAGTGATGATGGTGATGGAAGAGCACCTAATGGTGAGGTTACTTTAATCG
CGAGTATCTTTACCAAGACTAAAAATTGGTTTGATCTAGATAAACAAACTTATTTAAAAAAGAAAAATGATTTCATGAAA
AAATTATCGCTTGAATTGGAAAGTCAATTTGATATTGATCCTGAAAATTGGCTACATAGGGAATTAGCAACTCCATTGGG
ATTTGAAAAATGGACAAATAGACCTAATGGAATAGTAGGTGGGCTTGGCCAGAATCCTGATATTTTTGGTTTATTTGGAC
TATCAAGTAGGACACCTTTTGAAGGTTTATGGCTATGTGGAGATTCGATTTATCCTGGAGAGGGCACTGCAGGTGTTAGT
CAGTCTGCATTAATGGTTTCAAGGCAAATTTTAGCTTCTAGAGGTATAAAAAATTTTAGTTTATAA

Upstream 100 bases:

>100_bases
ATGTCACCTCCATGTACTTGTTCAATACTTTTTGGATAGGTTTCACCTAATTCATCACAAATTTCGTTAACTTCAATGGG
TGATAATTTTTGCATTTTCA

Downstream 100 bases:

>100_bases
AATTTTTTCTGATTTCTTTTGCTTCAGCAAGTTTGCTAGAAAGTAACTCCCAATTTTTTTCTTTAATAAGAGACTCTAGT
ATATTGAGATTATTTTTAAA

Product: phytoene dehydrogenase and related protein

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; C-3 4' Desaturase CrtD; Phytoene Dehydrogenase; Carotenoid Isomerase; Phytoene Dehydrogenase ; Carotene Isomerase; Lycopene Cyclase; Phytoene Dehydrogenase And Related Protein; Phytoene Dehydrogenase And Related Proteins-Like; Phytoene Dehydrogenase And Related Proteins; Phytoene Dehydrogenase-Like; Phytoene Dehydrogenase-Related Protein; All-Trans-Retinol; Phytoene Dehydrogenase/Carotenoid Isomerase

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MRNSEVIVVGAGIAGLTSAAILSKQGLSVNLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEKGGIHSRIFNFLDIPSP
EATILDPACIVDLNDGGKPIPIWYEKSKWIAEQEMQFPGSGKFWKLCALIHQSNWIFANNNPVLPVSNFWDFSQLLKALV
PSNLVTGILLKSTIFDLLRICGLSNNERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
ESSLRKTEANLIFGQKVNSINFDEENMCWKVSANSKKKSFIYQAKDLIYTAPPQSLLNHLKDPLKRKKKYQNRINNLPDP
SGAVVFYSALKREHIKKTFSNHYQFVSKEFTSVFVSISDDGDGRAPNGEVTLIASIFTKTKNWFDLDKQTYLKKKNDFMK
KLSLELESQFDIDPENWLHRELATPLGFEKWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVSRQILASRGIKNFSL

Sequences:

>Translated_501_residues
MRNSEVIVVGAGIAGLTSAAILSKQGLSVNLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEKGGIHSRIFNFLDIPSP
EATILDPACIVDLNDGGKPIPIWYEKSKWIAEQEMQFPGSGKFWKLCALIHQSNWIFANNNPVLPVSNFWDFSQLLKALV
PSNLVTGILLKSTIFDLLRICGLSNNERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
ESSLRKTEANLIFGQKVNSINFDEENMCWKVSANSKKKSFIYQAKDLIYTAPPQSLLNHLKDPLKRKKKYQNRINNLPDP
SGAVVFYSALKREHIKKTFSNHYQFVSKEFTSVFVSISDDGDGRAPNGEVTLIASIFTKTKNWFDLDKQTYLKKKNDFMK
KLSLELESQFDIDPENWLHRELATPLGFEKWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVSRQILASRGIKNFSL
>Mature_501_residues
MRNSEVIVVGAGIAGLTSAAILSKQGLSVNLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEKGGIHSRIFNFLDIPSP
EATILDPACIVDLNDGGKPIPIWYEKSKWIAEQEMQFPGSGKFWKLCALIHQSNWIFANNNPVLPVSNFWDFSQLLKALV
PSNLVTGILLKSTIFDLLRICGLSNNERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
ESSLRKTEANLIFGQKVNSINFDEENMCWKVSANSKKKSFIYQAKDLIYTAPPQSLLNHLKDPLKRKKKYQNRINNLPDP
SGAVVFYSALKREHIKKTFSNHYQFVSKEFTSVFVSISDDGDGRAPNGEVTLIASIFTKTKNWFDLDKQTYLKKKNDFMK
KLSLELESQFDIDPENWLHRELATPLGFEKWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVSRQILASRGIKNFSL

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55995; Mature: 55995

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNSEVIVVGAGIAGLTSAAILSKQGLSVNLIESHTQSGGCAGTFKRKNYIFDVGATQVA
CCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCEEEECCCHHHC
GLEKGGIHSRIFNFLDIPSPEATILDPACIVDLNDGGKPIPIWYEKSKWIAEQEMQFPGS
CCCCCCHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCCCEEEECCCCHHHHHHHCCCCC
GKFWKLCALIHQSNWIFANNNPVLPVSNFWDFSQLLKALVPSNLVTGILLKSTIFDLLRI
CCHHHHHHHHHCCCEEEECCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
CGLSNNERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
HCCCCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ESSLRKTEANLIFGQKVNSINFDEENMCWKVSANSKKKSFIYQAKDLIYTAPPQSLLNHL
HHHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCHHHHHEEHHHEEEECCHHHHHHHH
KDPLKRKKKYQNRINNLPDPSGAVVFYSALKREHIKKTFSNHYQFVSKEFTSVFVSISDD
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECC
GDGRAPNGEVTLIASIFTKTKNWFDLDKQTYLKKKNDFMKKLSLELESQFDIDPENWLHR
CCCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ELATPLGFEKWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
HHCCCCCCHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCCEEEEECCEECCCCCCCCCC
QSALMVSRQILASRGIKNFSL
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRNSEVIVVGAGIAGLTSAAILSKQGLSVNLIESHTQSGGCAGTFKRKNYIFDVGATQVA
CCCCCEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCEEEECCCHHHC
GLEKGGIHSRIFNFLDIPSPEATILDPACIVDLNDGGKPIPIWYEKSKWIAEQEMQFPGS
CCCCCCHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCCCEEEECCCCHHHHHHHCCCCC
GKFWKLCALIHQSNWIFANNNPVLPVSNFWDFSQLLKALVPSNLVTGILLKSTIFDLLRI
CCHHHHHHHHHCCCEEEECCCCEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
CGLSNNERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQQPHGLWHLKKSMQSLSESL
HCCCCCHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ESSLRKTEANLIFGQKVNSINFDEENMCWKVSANSKKKSFIYQAKDLIYTAPPQSLLNHL
HHHHHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCHHHHHEEHHHEEEECCHHHHHHHH
KDPLKRKKKYQNRINNLPDPSGAVVFYSALKREHIKKTFSNHYQFVSKEFTSVFVSISDD
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECC
GDGRAPNGEVTLIASIFTKTKNWFDLDKQTYLKKKNDFMKKLSLELESQFDIDPENWLHR
CCCCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ELATPLGFEKWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
HHCCCCCCHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCCEEEEECCEECCCCCCCCCC
QSALMVSRQILASRGIKNFSL
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA