Click here to switch to the map view.

The map label for this gene is hycB

Identifier: 126697089

GI number: 126697089

Start: 1472925

End: 1473932

Strand: Direct

Name: hycB

Synonym: P9301_17511

Alternate gene names: NA

Gene position: 1472925-1473932 (Clockwise)

Preceding gene: 126697088

Following gene: 126697090

Centisome position: 89.71

GC content: 33.83

Gene sequence:

>1008_bases
TTGATTATAACTAAGAATAAAAAAGATAAATGGATTAAATTAATTTGTGGTGCAAGTAATGAAGATATTGTTGCCATAGA
AGATTTATGTGCAATTTATACTGCTGCAGGTGTCGACTACATAGATGTTGCCGCAGAAGAATCTATAGTACACGCAGCAA
AAAAAGGAATCGAGTGGGCAAAAAAAGTCTTTAAAAACTCCCCTGGATTAATGATAAGCATTAGTGATGGAAATGATATC
CACTTTCGTAAAGCAAAATTTGATCCATTGAAATGTCCCCCTAAGTGTCCAAGACCGTGCGAAAAAGTATGCCCCACCTT
TGCAATTGATAATTCTGGGATCAAAAAGAGTAAATGTTATGGATGTGGAAGATGTTTGAATAGCTGTCCCCTAAATCTAA
TTAGTGAATATGAATATAATTTGTCAAAAGATGATTTAGGATCAACACTTCAGAAAATAAAACCTAATGCAGTAGAAATT
CATACAGAAATCAATCGCCTAGATTCTTTTGCAAAAGTTGTCAGTATCATTAAAAGTTCTAGAAAAAAATTAGACAAGAT
ATCTATCAGTTGTGGATTAAATCAATCTTTCAAAAAATCACAAGAGCCCGAAGATCTTTTGAAAGCTCTTTGGGAAAGAT
ATGAAATTCTTAAAAAACTTGATATTCCCCTTATTTGGCAGCTAGATGGAAGGCCAATGTCTGGAGATCTTGCTCCTTCA
ACGAGTAGAGATGCTGTAGAGTTGTTTGAAAAAATAGGTTCAGATCTTCCACCTGGATTAATTCAATTGGCAGGAGGAAC
AAATGAAAAAACTCATGAATTTTTGAATTCAAACAATCTTCCAGACGGAATAGCATTTGGAAGTGCTGCAAGAAAAATTA
TGCAGCCCCTTATTGAATTTGCTCACAAAAACAACAAAAAACTCTATGAATATCCTGAAAGAATGGCTTTAGCGATCAAA
AAAGCTAAAAAATTTCTAGAGCCATGGAAATCGAGCTCATTCAAATAA

Upstream 100 bases:

>100_bases
ATAATAAACTAACGATAGTTGTTGAAATGGGGGGTTCAAGAAAACTTGAATGGAAGTCGTTAAGTAATTATATTTTAGAT
GAATTTGAAAATTAAATCGT

Downstream 100 bases:

>100_bases
TATTTTTATTTTTCAAAACTAGCGCCATGTTTATAAAAACTTTGTATTTTTTGGATAGAAAAAAATCTTTTAATGTATTA
AAATAAAAAATCAATGGGCC

Product: Fe-S-cluster-containing hydrogenase components 2

Products: NA

Alternate protein names: LdpA Protein; 4Fe-4S Ferredoxin; Light Dependent Period; Ferredoxin 4Fe-4S Type; Alpha-Helical Ferredoxin

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MIITKNKKDKWIKLICGASNEDIVAIEDLCAIYTAAGVDYIDVAAEESIVHAAKKGIEWAKKVFKNSPGLMISISDGNDI
HFRKAKFDPLKCPPKCPRPCEKVCPTFAIDNSGIKKSKCYGCGRCLNSCPLNLISEYEYNLSKDDLGSTLQKIKPNAVEI
HTEINRLDSFAKVVSIIKSSRKKLDKISISCGLNQSFKKSQEPEDLLKALWERYEILKKLDIPLIWQLDGRPMSGDLAPS
TSRDAVELFEKIGSDLPPGLIQLAGGTNEKTHEFLNSNNLPDGIAFGSAARKIMQPLIEFAHKNNKKLYEYPERMALAIK
KAKKFLEPWKSSSFK

Sequences:

>Translated_335_residues
MIITKNKKDKWIKLICGASNEDIVAIEDLCAIYTAAGVDYIDVAAEESIVHAAKKGIEWAKKVFKNSPGLMISISDGNDI
HFRKAKFDPLKCPPKCPRPCEKVCPTFAIDNSGIKKSKCYGCGRCLNSCPLNLISEYEYNLSKDDLGSTLQKIKPNAVEI
HTEINRLDSFAKVVSIIKSSRKKLDKISISCGLNQSFKKSQEPEDLLKALWERYEILKKLDIPLIWQLDGRPMSGDLAPS
TSRDAVELFEKIGSDLPPGLIQLAGGTNEKTHEFLNSNNLPDGIAFGSAARKIMQPLIEFAHKNNKKLYEYPERMALAIK
KAKKFLEPWKSSSFK
>Mature_335_residues
MIITKNKKDKWIKLICGASNEDIVAIEDLCAIYTAAGVDYIDVAAEESIVHAAKKGIEWAKKVFKNSPGLMISISDGNDI
HFRKAKFDPLKCPPKCPRPCEKVCPTFAIDNSGIKKSKCYGCGRCLNSCPLNLISEYEYNLSKDDLGSTLQKIKPNAVEI
HTEINRLDSFAKVVSIIKSSRKKLDKISISCGLNQSFKKSQEPEDLLKALWERYEILKKLDIPLIWQLDGRPMSGDLAPS
TSRDAVELFEKIGSDLPPGLIQLAGGTNEKTHEFLNSNNLPDGIAFGSAARKIMQPLIEFAHKNNKKLYEYPERMALAIK
KAKKFLEPWKSSSFK

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37438; Mature: 37438

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIITKNKKDKWIKLICGASNEDIVAIEDLCAIYTAAGVDYIDVAAEESIVHAAKKGIEWA
CCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KKVFKNSPGLMISISDGNDIHFRKAKFDPLKCPPKCPRPCEKVCPTFAIDNSGIKKSKCY
HHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEECCCCCCHHHHH
GCGRCLNSCPLNLISEYEYNLSKDDLGSTLQKIKPNAVEIHTEINRLDSFAKVVSIIKSS
HHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
RKKLDKISISCGLNQSFKKSQEPEDLLKALWERYEILKKLDIPLIWQLDGRPMSGDLAPS
HHHHHHEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
TSRDAVELFEKIGSDLPPGLIQLAGGTNEKTHEFLNSNNLPDGIAFGSAARKIMQPLIEF
CCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AHKNNKKLYEYPERMALAIKKAKKFLEPWKSSSFK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIITKNKKDKWIKLICGASNEDIVAIEDLCAIYTAAGVDYIDVAAEESIVHAAKKGIEWA
CCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KKVFKNSPGLMISISDGNDIHFRKAKFDPLKCPPKCPRPCEKVCPTFAIDNSGIKKSKCY
HHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHCCEEEECCCCCCHHHHH
GCGRCLNSCPLNLISEYEYNLSKDDLGSTLQKIKPNAVEIHTEINRLDSFAKVVSIIKSS
HHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
RKKLDKISISCGLNQSFKKSQEPEDLLKALWERYEILKKLDIPLIWQLDGRPMSGDLAPS
HHHHHHEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
TSRDAVELFEKIGSDLPPGLIQLAGGTNEKTHEFLNSNNLPDGIAFGSAARKIMQPLIEF
CCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AHKNNKKLYEYPERMALAIKKAKKFLEPWKSSSFK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA