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The map label for this gene is ccdA [H]

Identifier: 126696987

GI number: 126696987

Start: 1379361

End: 1380017

Strand: Direct

Name: ccdA [H]

Synonym: P9301_16491

Alternate gene names: 126696987

Gene position: 1379361-1380017 (Clockwise)

Preceding gene: 126696986

Following gene: 126696988

Centisome position: 84.01

GC content: 34.09

Gene sequence:

>657_bases
ATGCAGAATGGTCTTAATAATCCTGGCCCATTTACTATATTTCTGATCTTCAGCGCAGGACTTTTAACGAGTCTGGGACC
TTGTTCATTATCATTACTTCCAGTCACAATTGCTTATATAGGAGGAACAGAGAAAAATAAATTTAAACTTATTAGTTTTT
CAGGAGGAGTTGTTTTTTCACTTGTTGCTCTGGGTTCTGCTAGTGGATTCTTAGGGAAGATATATGGACAAATTCCATCC
TATTACACTTCGATTGTTGCCTTGATAGCAATAATAATGGGTTTAAATTTACTAGGAATTGTAAAATTTAAGTTTCCGAA
TGGGCCTGATTTTAAAATAATTGAAGATAAAATTCCATCCTTTCTGGCGCCATTTGCTATTGGAACTAGTTTTGGACTGG
CCTCTTCACCTTGCATTACTCCAGTTTTAGCAACTCTTCTGGTATGGGTATCGCAAGCTAAAAACCCAACAATCTCTATT
ATTTTTTTATTTTTCTTTGGAATAGGCCAAGTAACTCCACTAATCGTTGCGGGAGCCACTGCAGAAAACTTAAAAAAATT
TTTAGAGCTTAGAAAATTTAGTCAAATAATTCCTACTCTTAGTGGGATATTTTTAGTTTCCCTAGGATTATTAAATTTAT
TTTCAAATTGGATTTAG

Upstream 100 bases:

>100_bases
CGAAAGACTCTTAATTAGTTAGAATTTAAAGGATTTAAGTCAAGCTATCGAATCATTTAATCTATTTATTTCAGAATTAT
CTCAAAAGGGTAATCTGCTT

Downstream 100 bases:

>100_bases
ATGACTATTGTAAAGGATTTAATTTTCAGAATATCAAGTTTAAAATTCGCTATTTCACTCATAATATTCATAGCCATCTC
AAGTGGTGTAGGAACTTTCA

Product: putative c-type cytochrome biogenesis protein CcdA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQNGLNNPGPFTIFLIFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFSLVALGSASGFLGKIYGQIPS
YYTSIVALIAIIMGLNLLGIVKFKFPNGPDFKIIEDKIPSFLAPFAIGTSFGLASSPCITPVLATLLVWVSQAKNPTISI
IFLFFFGIGQVTPLIVAGATAENLKKFLELRKFSQIIPTLSGIFLVSLGLLNLFSNWI

Sequences:

>Translated_218_residues
MQNGLNNPGPFTIFLIFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFSLVALGSASGFLGKIYGQIPS
YYTSIVALIAIIMGLNLLGIVKFKFPNGPDFKIIEDKIPSFLAPFAIGTSFGLASSPCITPVLATLLVWVSQAKNPTISI
IFLFFFGIGQVTPLIVAGATAENLKKFLELRKFSQIIPTLSGIFLVSLGLLNLFSNWI
>Mature_218_residues
MQNGLNNPGPFTIFLIFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFSLVALGSASGFLGKIYGQIPS
YYTSIVALIAIIMGLNLLGIVKFKFPNGPDFKIIEDKIPSFLAPFAIGTSFGLASSPCITPVLATLLVWVSQAKNPTISI
IFLFFFGIGQVTPLIVAGATAENLKKFLELRKFSQIIPTLSGIFLVSLGLLNLFSNWI

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 23230; Mature: 23230

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNGLNNPGPFTIFLIFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFS
CCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
LVALGSASGFLGKIYGQIPSYYTSIVALIAIIMGLNLLGIVKFKFPNGPDFKIIEDKIPS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCEEEHHHHHH
FLAPFAIGTSFGLASSPCITPVLATLLVWVSQAKNPTISIIFLFFFGIGQVTPLIVAGAT
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCC
AENLKKFLELRKFSQIIPTLSGIFLVSLGLLNLFSNWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQNGLNNPGPFTIFLIFSAGLLTSLGPCSLSLLPVTIAYIGGTEKNKFKLISFSGGVVFS
CCCCCCCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHH
LVALGSASGFLGKIYGQIPSYYTSIVALIAIIMGLNLLGIVKFKFPNGPDFKIIEDKIPS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCEEEHHHHHH
FLAPFAIGTSFGLASSPCITPVLATLLVWVSQAKNPTISIIFLFFFGIGQVTPLIVAGAT
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEECCC
AENLKKFLELRKFSQIIPTLSGIFLVSLGLLNLFSNWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]