| Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
|---|---|
| Accession | NC_009091 |
| Length | 1,641,879 |
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The map label for this gene is recG [H]
Identifier: 126696154
GI number: 126696154
Start: 703147
End: 705603
Strand: Direct
Name: recG [H]
Synonym: P9301_08161
Alternate gene names: 126696154
Gene position: 703147-705603 (Clockwise)
Preceding gene: 126696153
Following gene: 126696155
Centisome position: 42.83
GC content: 28.0
Gene sequence:
>2457_bases GTGACTTTTAGTGGGAATAATAATAAATTAATTAAAGAATGGATAAGAACTCTTCAAAAGTCTCTTACTATTGAAACTGA AAATAAATTCATTAACACTTTAGGAAGAGAAAGATATTTTAATGATTATTTGCATGAATCATTAAAAAAACTAGATAATC TAAATCTCTCAGACGAATATTTAAGAATATTTTATGAATTTTCTAAAAAATATAGTGAATATAATAAATTAGATGAAAAT CAAAGAAAAAGGTTAATTATAGATACAAGAAAAAATCTTTATAAACTAGGCAAAACTCAAGAAATAGAAAGTTCTAATAT TATTTCTAATAAAGTTTTTCTAAATAAAGCTGATTCAAGTTTGTCTTTTGATTCAGATATTTCATTAATAAAAAATGTAG GAAAAGTTTATAAAAATAAGCTTAATGAATTAGGGATATTTCATATAAAAGATCTAATTAATTATTTCCCACGAACATAT CTAGATTATACAAATAGAGTCAAGATAATAAATTTAAAACCAGATAATTTATACACGTGCATCGCAAATGTTAAAAGATT TTATATTCATAAGAGTAAAAAAAATAGTAATTTATCAATAATGAATATTGTGGTTTATGATGAAACGTCTTCAATAAAGG TTACAAAATTTTTTTTAGGAAGAAGATTTAGATCTTACTCCTTCTTTACATCTCAAAAATCTTTGTATACTGCTGGCACC AAATTAGCAATTTCCGGTAAGGTTAAACTGACAGAGTATGGTAAAACTTTTGTAGATCCGCAGATTGAAATTCTTAAGGA TAATAATGACAATTATAATTTCTCAGGCAAAATATTACCCTTGTATTCATTAGGTGAAGCATTATCAAATATGAGTTTTA TAAAACTTATGAAAAAGGTACTAATTTATGCAAAGCAATATCCAGAAATTTTAAATAAGAAGCAACTTGATTCATTATCT TTATTATCAAAAGGAGAGTCTTTGATTAATATTCATTTTCCACCAACTCAACAGGCACTTATTGAGTCAAAAAAACGTTT GGTTTTTGATGAGTTATTTCTACTTCAAATAAAATTCCTACTTAGAAAAAGAAAGACGAATAAAAATGTAACTTCCCAAC AATTACCTCAAAAGAAATCTTTATTAAAAGAATTTTTAAATAATTTTCCTTTCGAATTAACAAAATCTCAAGAAAATGTT TTAAATGAAATTAAGAAAGATTTATCTAATCCCGTACCAATGTCTAGATTGCTTCAGGGAGATGTGGGAAGTGGTAAAAC CATAATTGCAATTGCGTCTCTTTTACTTGTCATTGAAAAAAACCTGCAAGGTGCATTTATGGTCCCAACTGAGGTATTGG CAGAACAGCATTATAAAAATTTATTAAAATATTTGAACCCTCTTTTAGTTTCTGTTGAACTACTTACTGGGAATACTCCT CAAAAAAAGAGAAAAGAAATTTTCTCTAATTTGAACAATGGATTAGTTGATATCCTCGTAGGTACTCATGCATTATTTGA GGATAAAGTCATCTTTAATGCATTAGGAATGGTCGTAATTGATGAACAACATAGATTTGGAGTTACTCAAAGAAATAGAT TACTAAACAAAGGAGATAATACTAACTTGTTATCAATGACAGCAACACCAATTCCAAGAACTCTTGCGCTTTCCATTTAT GGTGATTTAGATGTAAGTCAAATTACGGAACTCCCTCCTGGGAGAGTTCCTATAACTACAAAAATAATTTCAGAAGATAA TTTAACTAACTTGTTCAAAATTGTTGAAGATGAGATTAATAAGGGAAAGCAAGCTTATGTGATTTTGCCACTTATTGAAG ATTCAGAAAAAATGAATTTAAGCTCCGCAAAGAAAACATTTAAATATTTATCAGAAGAGGTCTTTTTTAACAAGAAAGTT GGATTATTACATGGCAAATTAAGTTCGCAAGAAAAGAACGAAGTGATTAATTCTTTTTTAAAAAATGAAATTAATATTTT GGTTTCAACCACTGTAATTGAGGTTGGCATTGATGTTCCCAACGCCACAATTATGATTATTTATAATTCGGACAGATTTG GCTTGTCCCAACTACATCAATTAAGGGGGAGAGTTGGGAGAGGATCAACAAAATCTTTTTGTTATCTGGTAACCTCCGAT AAAAATGGATTAGAAAATAAACGACTTTGTGTTTTGCAAAAATCTAATGATGGCTTTTATATCGCTGAAAAAGACTTGGA GCTTAGAGGACCAGGCCAGATTTTAGGATATAGACAATCCGGATTGCCTGATTTTGTACTGGACAATTTACCTAACAATA AATTCCTTATTGATAAGGCTCGTGAAGAAGCTATTAAGATTGTTAGTGGTGATCCTGATTTAAAAAAAAATATTGTTTTA AGGAATATACTTATTGATAATTCTGATAATAAATTCATTCATGATTTCTTAAATTGA
Upstream 100 bases:
>100_bases CAAAAATCAATTTCAGCGTTTGATTAAAAAAGAGACTTACTGGAGGCAAAAACAAATAACTTTGAATAAAATACGTTGAA AAAATAACTCTTTTTCAAAT
Downstream 100 bases:
>100_bases GAACTATCATTGTAATTTTTGATATATATGTCACTATAAATCAATTGCAAATTTCAATTGAAAATTTGGAATAAAATACC AATTAAAGATAATGGAGATA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 818; Mature: 817
Protein sequence:
>818_residues MTFSGNNNKLIKEWIRTLQKSLTIETENKFINTLGRERYFNDYLHESLKKLDNLNLSDEYLRIFYEFSKKYSEYNKLDEN QRKRLIIDTRKNLYKLGKTQEIESSNIISNKVFLNKADSSLSFDSDISLIKNVGKVYKNKLNELGIFHIKDLINYFPRTY LDYTNRVKIINLKPDNLYTCIANVKRFYIHKSKKNSNLSIMNIVVYDETSSIKVTKFFLGRRFRSYSFFTSQKSLYTAGT KLAISGKVKLTEYGKTFVDPQIEILKDNNDNYNFSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLS LLSKGESLINIHFPPTQQALIESKKRLVFDELFLLQIKFLLRKRKTNKNVTSQQLPQKKSLLKEFLNNFPFELTKSQENV LNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTP QKKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSIY GDLDVSQITELPPGRVPITTKIISEDNLTNLFKIVEDEINKGKQAYVILPLIEDSEKMNLSSAKKTFKYLSEEVFFNKKV GLLHGKLSSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTSD KNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKIVSGDPDLKKNIVL RNILIDNSDNKFIHDFLN
Sequences:
>Translated_818_residues MTFSGNNNKLIKEWIRTLQKSLTIETENKFINTLGRERYFNDYLHESLKKLDNLNLSDEYLRIFYEFSKKYSEYNKLDEN QRKRLIIDTRKNLYKLGKTQEIESSNIISNKVFLNKADSSLSFDSDISLIKNVGKVYKNKLNELGIFHIKDLINYFPRTY LDYTNRVKIINLKPDNLYTCIANVKRFYIHKSKKNSNLSIMNIVVYDETSSIKVTKFFLGRRFRSYSFFTSQKSLYTAGT KLAISGKVKLTEYGKTFVDPQIEILKDNNDNYNFSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLS LLSKGESLINIHFPPTQQALIESKKRLVFDELFLLQIKFLLRKRKTNKNVTSQQLPQKKSLLKEFLNNFPFELTKSQENV LNEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTP QKKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSIY GDLDVSQITELPPGRVPITTKIISEDNLTNLFKIVEDEINKGKQAYVILPLIEDSEKMNLSSAKKTFKYLSEEVFFNKKV GLLHGKLSSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTSD KNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKIVSGDPDLKKNIVL RNILIDNSDNKFIHDFLN >Mature_817_residues TFSGNNNKLIKEWIRTLQKSLTIETENKFINTLGRERYFNDYLHESLKKLDNLNLSDEYLRIFYEFSKKYSEYNKLDENQ RKRLIIDTRKNLYKLGKTQEIESSNIISNKVFLNKADSSLSFDSDISLIKNVGKVYKNKLNELGIFHIKDLINYFPRTYL DYTNRVKIINLKPDNLYTCIANVKRFYIHKSKKNSNLSIMNIVVYDETSSIKVTKFFLGRRFRSYSFFTSQKSLYTAGTK LAISGKVKLTEYGKTFVDPQIEILKDNNDNYNFSGKILPLYSLGEALSNMSFIKLMKKVLIYAKQYPEILNKKQLDSLSL LSKGESLINIHFPPTQQALIESKKRLVFDELFLLQIKFLLRKRKTNKNVTSQQLPQKKSLLKEFLNNFPFELTKSQENVL NEIKKDLSNPVPMSRLLQGDVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTPQ KKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATPIPRTLALSIYG DLDVSQITELPPGRVPITTKIISEDNLTNLFKIVEDEINKGKQAYVILPLIEDSEKMNLSSAKKTFKYLSEEVFFNKKVG LLHGKLSSQEKNEVINSFLKNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTSDK NGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKAREEAIKIVSGDPDLKKNIVLR NILIDNSDNKFIHDFLN
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=699, Percent_Identity=36.480686695279, Blast_Score=406, Evalue=1e-114, Organism=Escherichia coli, GI1787357, Length=383, Percent_Identity=37.0757180156658, Blast_Score=270, Evalue=3e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 93765; Mature: 93634
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: PS50003 PH_DOMAIN ; PS00185 IPNS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFSGNNNKLIKEWIRTLQKSLTIETENKFINTLGRERYFNDYLHESLKKLDNLNLSDEY CCCCCCCCHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LRIFYEFSKKYSEYNKLDENQRKRLIIDTRKNLYKLGKTQEIESSNIISNKVFLNKADSS HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCCCCEECEEEEECCCCC LSFDSDISLIKNVGKVYKNKLNELGIFHIKDLINYFPRTYLDYTNRVKIINLKPDNLYTC CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHH IANVKRFYIHKSKKNSNLSIMNIVVYDETSSIKVTKFFLGRRFRSYSFFTSQKSLYTAGT HHHHHHHHEEECCCCCCEEEEEEEEEECCCCEEEHHHHHHHHHHCCEEEECCCHHEECCC KLAISGKVKLTEYGKTFVDPQIEILKDNNDNYNFSGKILPLYSLGEALSNMSFIKLMKKV EEEEECEEEEEECCCCCCCCCEEEEECCCCCEEECCEEEEHHHHHHHHCCCHHHHHHHHH LIYAKQYPEILNKKQLDSLSLLSKGESLINIHFPPTQQALIESKKRLVFDELFLLQIKFL HHHHHHHHHHHCHHCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH LRKRKTNKNVTSQQLPQKKSLLKEFLNNFPFELTKSQENVLNEIKKDLSNPVPMSRLLQG HHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCHHHHHCC DVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTP CCCCCCHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC QKKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGDN HHHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHHCCEEEECCCHHCCCHHHHHHHCCCCC TNLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDNLTNLFKIVEDEIN CCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHC KGKQAYVILPLIEDSEKMNLSSAKKTFKYLSEEVFFNKKVGLLHGKLSSQEKNEVINSFL CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH KNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTSD HCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC KNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKA CCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCHHHHHCCCCCCEEEEHH REEAIKIVSGDPDLKKNIVLRNILIDNSDNKFIHDFLN HHHHEEEECCCCCHHHHEEEEEEEEECCCCCHHHHHCC >Mature Secondary Structure TFSGNNNKLIKEWIRTLQKSLTIETENKFINTLGRERYFNDYLHESLKKLDNLNLSDEY CCCCCCCHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH LRIFYEFSKKYSEYNKLDENQRKRLIIDTRKNLYKLGKTQEIESSNIISNKVFLNKADSS HHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCCCCEECEEEEECCCCC LSFDSDISLIKNVGKVYKNKLNELGIFHIKDLINYFPRTYLDYTNRVKIINLKPDNLYTC CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHH IANVKRFYIHKSKKNSNLSIMNIVVYDETSSIKVTKFFLGRRFRSYSFFTSQKSLYTAGT HHHHHHHHEEECCCCCCEEEEEEEEEECCCCEEEHHHHHHHHHHCCEEEECCCHHEECCC KLAISGKVKLTEYGKTFVDPQIEILKDNNDNYNFSGKILPLYSLGEALSNMSFIKLMKKV EEEEECEEEEEECCCCCCCCCEEEEECCCCCEEECCEEEEHHHHHHHHCCCHHHHHHHHH LIYAKQYPEILNKKQLDSLSLLSKGESLINIHFPPTQQALIESKKRLVFDELFLLQIKFL HHHHHHHHHHHCHHCCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH LRKRKTNKNVTSQQLPQKKSLLKEFLNNFPFELTKSQENVLNEIKKDLSNPVPMSRLLQG HHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCHHHHHCC DVGSGKTIIAIASLLLVIEKNLQGAFMVPTEVLAEQHYKNLLKYLNPLLVSVELLTGNTP CCCCCCHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC QKKRKEIFSNLNNGLVDILVGTHALFEDKVIFNALGMVVIDEQHRFGVTQRNRLLNKGDN HHHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHHCCEEEECCCHHCCCHHHHHHHCCCCC TNLLSMTATPIPRTLALSIYGDLDVSQITELPPGRVPITTKIISEDNLTNLFKIVEDEIN CCEEEEECCCCCCEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHC KGKQAYVILPLIEDSEKMNLSSAKKTFKYLSEEVFFNKKVGLLHGKLSSQEKNEVINSFL CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH KNEINILVSTTVIEVGIDVPNATIMIIYNSDRFGLSQLHQLRGRVGRGSTKSFCYLVTSD HCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC KNGLENKRLCVLQKSNDGFYIAEKDLELRGPGQILGYRQSGLPDFVLDNLPNNKFLIDKA CCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCHHHHHCCCCCCEEEEHH REEAIKIVSGDPDLKKNIVLRNILIDNSDNKFIHDFLN HHHHEEEECCCCCHHHHEEEEEEEEECCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]