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The map label for this gene is petJ [H]

Identifier: 126696110

GI number: 126696110

Start: 671231

End: 671584

Strand: Direct

Name: petJ [H]

Synonym: P9301_07721

Alternate gene names: 126696110

Gene position: 671231-671584 (Clockwise)

Preceding gene: 126696109

Following gene: 126696111

Centisome position: 40.88

GC content: 29.66

Gene sequence:

>354_bases
ATGAAAATATTTAAATTTCTATTTGTAATTCCTTTAATAACTTTAATAATTATTTTTCAAACCTCTTTGCAAAATAGATA
TCTAATGGCTTCTGATATTAGAGATGGAGAAACAATTTTTAGAAATGTCTGTGCAGGCTGCCATGTAAGAGGTGGATCAG
TCGTTCTCAAAGGTTCTAAATCATTAAAACTTTCCGACCTTGAAAAAAGAGGAATAGCAGATGTAAATTCAATAACAATA
ATTGCGAATGAAGGGATTGGTTTTATGAAAGGTTATAAAAATAAATTGAATGATGGAGAAGATAAGGTTCTTGCACAATG
GATTATTCAAAATGCAGAAAAGGGTTGGAAGTAA

Upstream 100 bases:

>100_bases
TGGTCTGTTAGGTAATCTTGTTGTAGCAGTAGAGCTATTAAAGTAGATAGATCGAGATTCAGAATTAATTGCTAAATTGA
TTGTGGGTGGAAAAAATCAA

Downstream 100 bases:

>100_bases
ATGAAAAGAATACTTCTTGCATCATTTTTATTTCTATTAGCTGAATATTCTTTTGCTGAGGAATTAATTAATTACACAAT
TACATCTGATTCTCAAACAA

Product: cytochrome c

Products: NA

Alternate protein names: Cytochrome c-553; Cytochrome c553; Soluble cytochrome f [H]

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MKIFKFLFVIPLITLIIIFQTSLQNRYLMASDIRDGETIFRNVCAGCHVRGGSVVLKGSKSLKLSDLEKRGIADVNSITI
IANEGIGFMKGYKNKLNDGEDKVLAQWIIQNAEKGWK

Sequences:

>Translated_117_residues
MKIFKFLFVIPLITLIIIFQTSLQNRYLMASDIRDGETIFRNVCAGCHVRGGSVVLKGSKSLKLSDLEKRGIADVNSITI
IANEGIGFMKGYKNKLNDGEDKVLAQWIIQNAEKGWK
>Mature_117_residues
MKIFKFLFVIPLITLIIIFQTSLQNRYLMASDIRDGETIFRNVCAGCHVRGGSVVLKGSKSLKLSDLEKRGIADVNSITI
IANEGIGFMKGYKNKLNDGEDKVLAQWIIQNAEKGWK

Specific function: Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 13105; Mature: 13105

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFKFLFVIPLITLIIIFQTSLQNRYLMASDIRDGETIFRNVCAGCHVRGGSVVLKGSK
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCC
SLKLSDLEKRGIADVNSITIIANEGIGFMKGYKNKLNDGEDKVLAQWIIQNAEKGWK
CCCCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKIFKFLFVIPLITLIIIFQTSLQNRYLMASDIRDGETIFRNVCAGCHVRGGSVVLKGSK
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCC
SLKLSDLEKRGIADVNSITIIANEGIGFMKGYKNKLNDGEDKVLAQWIIQNAEKGWK
CCCCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8106479; 8905231 [H]