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The map label for this gene is ctpA [H]

Identifier: 126696068

GI number: 126696068

Start: 649869

End: 651203

Strand: Direct

Name: ctpA [H]

Synonym: P9301_07301

Alternate gene names: 126696068

Gene position: 649869-651203 (Clockwise)

Preceding gene: 126696067

Following gene: 126696070

Centisome position: 39.58

GC content: 30.26

Gene sequence:

>1335_bases
TTGAAGATAAGAAAATTGCTTAAAAAAAAATTTATATTTCTGTTTGCGACATCCTTTTCTGGACTATTCTTAAATAGTTT
TGCAGAGGCAACAGTTTTAAATAATAGTTATAAAGAAGTAATTGATCATGTTTGGCAAATTGTATATAGAGATTTTCTTG
ATTCAAGCGGCAAATTTCAAAAGTCCAATTGGATTAATCTGAGAAAAGAAGTTTTATCAAAAACATATTCAGATAGCAAT
GAAGCATATGATGCGATTAGAGATATGCTTTCTAACTTAGATGATTCTTATACAAGATTTTTAGAACCTAAGGAATTTAA
TCAAATGAGAATCGATACCTCTGGTGAATTAACTGGAGTTGGTATCCAAATAGTTAAAGATAAAGAATCTGATGATTTAA
TAATTATTTCTCCCATAGAGGGCACCCCTGCCTTTGATGCTGGAATTAAAGCTAGAGATAAAATATTATCCATAGATGAT
ATTTCTACTGAAGGTATGAATATTGAGGAGGCCGTGAAATTAATAAGGGGGCAAAGAGGTACTAAAGTAAAGCTTGAAAT
TCTTAGAGGTTCTCAATCCTTTTTTAAGACTTTATCGAGAGAAAAAATTGAAATAAAATCTGTATCAAGTAAAGTCAATC
AAACCAAAAATGGCTTATTAATTGGCTATGTAAGAATTAAACAATTTAATGCAAATGCATCAAAAGAAACTAGAGATGCT
ATTAAGGATTTAGAAACAAAAAAAGTCGCAGGATATGTTCTTGACTTGAGAAGTAATCCAGGAGGTTTATTAGAATCAAG
CATTGATATCTCAAGGCACTTTATTAACAAAGGAGTAATAGTTAGTACAGTAAGTAAAGATGGTTTAAAAGAAACAAAAA
AAGGAAACGGACAAGCTCTAACTAAAAAACCCCTAGTTGTACTGGTTAATGAGGGTTCTGCTAGTGCTAGTGAAATAGTT
TCTGGTGCAATAAAAGATAATAAAAGAGGAAAATTAGTTGGAAAAAAAACGTTTGGTAAAGGTCTAGTTCAATCTATGAG
GACATTAGTTGATGGTTCAGGATTAACTGTTACAGTCGCCAAGTATTTAACTCCGAACGGTACTGATATAAACAAATCTG
GAATTATTCCAGATATAGATGTAAAAATGAATATCAACCCTATTCTCCAAAGAGAGATTGGAACTAGAAAAGATAAACAA
TATAGAGCTGGTGAAAAAGAGCTAATAAATATAATTAATAGAAAGAATCAGATAAGCGAATTTAAGCCCGACACTGCAAA
CCTTAATGCTTTCCTAAAAATTAATAAGGAAAATAAAATATTTTTATTAAATTAA

Upstream 100 bases:

>100_bases
CAACTTATTAAGGATGATGGGAAGTGGATTGATCCTTAAGGATTTGTCAAAATTTTGAATTATAAATAAATTCTTTTTAT
AATAAAAAATATCGAATTAA

Downstream 100 bases:

>100_bases
TTACTCATATCCAGCATTCTCTTTATTGGCACATAGGCTCTTCTTATTATTTCTGGGTCTAGTTCGATAGACGGGGAATT
GTTTTTCAAACAATCAAGAA

Product: carboxyl-terminal processing protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MKIRKLLKKKFIFLFATSFSGLFLNSFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQKSNWINLRKEVLSKTYSDSN
EAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDD
ISTEGMNIEEAVKLIRGQRGTKVKLEILRGSQSFFKTLSREKIEIKSVSSKVNQTKNGLLIGYVRIKQFNANASKETRDA
IKDLETKKVAGYVLDLRSNPGGLLESSIDISRHFINKGVIVSTVSKDGLKETKKGNGQALTKKPLVVLVNEGSASASEIV
SGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINKSGIIPDIDVKMNINPILQREIGTRKDKQ
YRAGEKELINIINRKNQISEFKPDTANLNAFLKINKENKIFLLN

Sequences:

>Translated_444_residues
MKIRKLLKKKFIFLFATSFSGLFLNSFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQKSNWINLRKEVLSKTYSDSN
EAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDD
ISTEGMNIEEAVKLIRGQRGTKVKLEILRGSQSFFKTLSREKIEIKSVSSKVNQTKNGLLIGYVRIKQFNANASKETRDA
IKDLETKKVAGYVLDLRSNPGGLLESSIDISRHFINKGVIVSTVSKDGLKETKKGNGQALTKKPLVVLVNEGSASASEIV
SGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINKSGIIPDIDVKMNINPILQREIGTRKDKQ
YRAGEKELINIINRKNQISEFKPDTANLNAFLKINKENKIFLLN
>Mature_444_residues
MKIRKLLKKKFIFLFATSFSGLFLNSFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQKSNWINLRKEVLSKTYSDSN
EAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGVGIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDD
ISTEGMNIEEAVKLIRGQRGTKVKLEILRGSQSFFKTLSREKIEIKSVSSKVNQTKNGLLIGYVRIKQFNANASKETRDA
IKDLETKKVAGYVLDLRSNPGGLLESSIDISRHFINKGVIVSTVSKDGLKETKKGNGQALTKKPLVVLVNEGSASASEIV
SGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVAKYLTPNGTDINKSGIIPDIDVKMNINPILQREIGTRKDKQ
YRAGEKELINIINRKNQISEFKPDTANLNAFLKINKENKIFLLN

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=33.2258064516129, Blast_Score=142, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 49554; Mature: 49554

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRKLLKKKFIFLFATSFSGLFLNSFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQ
CCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
KSNWINLRKEVLSKTYSDSNEAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCCCCEEEE
GIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDDISTEGMNIEEAVKLIRGQRG
EEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHCEEEECCCCCCCCCHHHHHHHHHCCCC
TKVKLEILRGSQSFFKTLSREKIEIKSVSSKVNQTKNGLLIGYVRIKQFNANASKETRDA
CEEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHH
IKDLETKKVAGYVLDLRSNPGGLLESSIDISRHFINKGVIVSTVSKDGLKETKKGNGQAL
HHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCCEE
TKKPLVVLVNEGSASASEIVSGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVA
ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
KYLTPNGTDINKSGIIPDIDVKMNINPILQREIGTRKDKQYRAGEKELINIINRKNQISE
EEECCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHCCCHHHHHHHHHCHHHHHH
FKPDTANLNAFLKINKENKIFLLN
CCCCCCCCEEEEEECCCCEEEEEC
>Mature Secondary Structure
MKIRKLLKKKFIFLFATSFSGLFLNSFAEATVLNNSYKEVIDHVWQIVYRDFLDSSGKFQ
CCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
KSNWINLRKEVLSKTYSDSNEAYDAIRDMLSNLDDSYTRFLEPKEFNQMRIDTSGELTGV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECCCCCEEEE
GIQIVKDKESDDLIIISPIEGTPAFDAGIKARDKILSIDDISTEGMNIEEAVKLIRGQRG
EEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHCEEEECCCCCCCCCHHHHHHHHHCCCC
TKVKLEILRGSQSFFKTLSREKIEIKSVSSKVNQTKNGLLIGYVRIKQFNANASKETRDA
CEEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHH
IKDLETKKVAGYVLDLRSNPGGLLESSIDISRHFINKGVIVSTVSKDGLKETKKGNGQAL
HHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCCEE
TKKPLVVLVNEGSASASEIVSGAIKDNKRGKLVGKKTFGKGLVQSMRTLVDGSGLTVTVA
ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEE
KYLTPNGTDINKSGIIPDIDVKMNINPILQREIGTRKDKQYRAGEKELINIINRKNQISE
EEECCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHCCCHHHHHHHHHCHHHHHH
FKPDTANLNAFLKINKENKIFLLN
CCCCCCCCEEEEEECCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]