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The map label for this gene is csd [H]

Identifier: 126695772

GI number: 126695772

Start: 379201

End: 380373

Strand: Reverse

Name: csd [H]

Synonym: P9301_04341

Alternate gene names: 126695772

Gene position: 380373-379201 (Counterclockwise)

Preceding gene: 126695773

Following gene: 126695767

Centisome position: 23.17

GC content: 29.84

Gene sequence:

>1173_bases
ATGATAAATAATCTAAGAGATCAAATACCCGCATTAAAAAATAAGTATTATTTCAACTATGGCGGTCAAGGACCATTACC
AAAATCTTCTCTAGACGCAATAGTTAAAACTTGGGAGATTATCCAAGATTTAGGACCATTTACCAATAATATGTGGCCTT
TTATTTACAAAGAAATATTGACCACAAAAAGAATCATTGCGCAAAAATTAGGTGTCAATTCAAAGAATGTAGCTTTTACC
GAAAACATCTCTTCCGGTATGATTTTGCCCTTTTGGGGAATAAAAGTGAAAGAGGGAGAAGAGTTGTTAATAAGTGACTG
TGAACATCCTGGAGTAGTGGCTGCAAGTCGAGAATTTTGCAGAAGAAATAAATTAACATTCAAAATTTTTCCAATCCAAA
AAATTAAAAATCTAAACGACGAAAATATAATTTTAGAGATTTTGAAAAATCTAAATAGTAAGACTAAGATCCTTATTATT
TCTCATATCTTATGGAACTTTGGATATAAAATTCCTTTAAAAGAAATTTCTATCGAATTAAAAAATAATCGAGAAGACTC
TTATTTACTTGTTGATGGTGCTCAAACCTTTGGGCACATAAATATTGAAAAAGAAGTTTTTTATTCTGATTTATATTCAA
TAACTTCTCATAAATGGGCATGTGGACCAGAAGGACTTGGTGCCATTTATGTCTCAGATAGATTTATTCATGAAACAGAT
CCAACAATAATTGGTTGGAAATCATTAAAAAAAGAACAAGGCATTTATGAGCCTTCAGATAATCTTTTTCATGATGATGC
AAGGAAATTTGAAATAGCTACCTCTTGTATTCCTTTACTTGCTGGACTCCGGAATTCTTTAGATCTTTTGGATAAAGACT
GCCATGAAAAAGAAAAAAACAAAAATATCAAAAGATTAAGTGGAAAACTTTGGGATGAATTAAATCAATCAAAGGGTGTT
GAATTAGTTTTAGAAAAAAAATATTTAAATGGTATTGTTAGTTTTAATATCGAAAATATTAAAGATAAGGATAAATTCGT
GAAGGAACTAGGAGGAAAAAAAATTTGGATAAGAGTTTTAGAAGATCCAAAATGGTTTAGAGCATGCGTACATCAAATGA
CTACAGAAGCTGAGATTGATTTACTTGCTAGAGAAATAAAAAATTTGACTTAA

Upstream 100 bases:

>100_bases
TGAACCTTGGAAAGTAATTGAGGATATTGAATTTAGAACAGTAACTTTAGTGGGCAATATTTAAAAAAATTCAAGAGTTG
AAAATATAATATAAATTTCC

Downstream 100 bases:

>100_bases
AGATCTTTTGATAAAAAATTTAGTTTACCAAGGTATCTCCGAGCTGTCCCATGCAATAAATTTGCCTGTAGATTCTGGTG
ATTGATTTTTAATAATATTG

Product: putative L-cysteine/cystine lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MINNLRDQIPALKNKYYFNYGGQGPLPKSSLDAIVKTWEIIQDLGPFTNNMWPFIYKEILTTKRIIAQKLGVNSKNVAFT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLTFKIFPIQKIKNLNDENIILEILKNLNSKTKILII
SHILWNFGYKIPLKEISIELKNNREDSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKNKNIKRLSGKLWDELNQSKGV
ELVLEKKYLNGIVSFNIENIKDKDKFVKELGGKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAREIKNLT

Sequences:

>Translated_390_residues
MINNLRDQIPALKNKYYFNYGGQGPLPKSSLDAIVKTWEIIQDLGPFTNNMWPFIYKEILTTKRIIAQKLGVNSKNVAFT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLTFKIFPIQKIKNLNDENIILEILKNLNSKTKILII
SHILWNFGYKIPLKEISIELKNNREDSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKNKNIKRLSGKLWDELNQSKGV
ELVLEKKYLNGIVSFNIENIKDKDKFVKELGGKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAREIKNLT
>Mature_390_residues
MINNLRDQIPALKNKYYFNYGGQGPLPKSSLDAIVKTWEIIQDLGPFTNNMWPFIYKEILTTKRIIAQKLGVNSKNVAFT
ENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFCRRNKLTFKIFPIQKIKNLNDENIILEILKNLNSKTKILII
SHILWNFGYKIPLKEISIELKNNREDSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKNKNIKRLSGKLWDELNQSKGV
ELVLEKKYLNGIVSFNIENIKDKDKFVKELGGKKIWIRVLEDPKWFRACVHQMTTEAEIDLLAREIKNLT

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=398, Percent_Identity=22.8643216080402, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6319831, Length=278, Percent_Identity=26.978417266187, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR020578
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 44931; Mature: 44931

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINNLRDQIPALKNKYYFNYGGQGPLPKSSLDAIVKTWEIIQDLGPFTNNMWPFIYKEIL
CCCCHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TTKRIIAQKLGVNSKNVAFTENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECEEECCCCCHHHCCCCCCCEEHHHHHHH
RRNKLTFKIFPIQKIKNLNDENIILEILKNLNSKTKILIISHILWNFGYKIPLKEISIEL
HCCCCEEEEECHHHHCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCHHHEEEEE
KNNREDSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
CCCCCCCEEEEECCCHHCEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEEEECCC
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKN
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNIKRLSGKLWDELNQSKGVELVLEKKYLNGIVSFNIENIKDKDKFVKELGGKKIWIRVL
CCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCEEEECCCCCCHHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEIDLLAREIKNLT
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MINNLRDQIPALKNKYYFNYGGQGPLPKSSLDAIVKTWEIIQDLGPFTNNMWPFIYKEIL
CCCCHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TTKRIIAQKLGVNSKNVAFTENISSGMILPFWGIKVKEGEELLISDCEHPGVVAASREFC
HHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECEEECCCCCHHHCCCCCCCEEHHHHHHH
RRNKLTFKIFPIQKIKNLNDENIILEILKNLNSKTKILIISHILWNFGYKIPLKEISIEL
HCCCCEEEEECHHHHCCCCCCHHHHHHHHCCCCCCEEEEHHHHHHHCCCCCCHHHEEEEE
KNNREDSYLLVDGAQTFGHINIEKEVFYSDLYSITSHKWACGPEGLGAIYVSDRFIHETD
CCCCCCCEEEEECCCHHCEECCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEEEECCC
PTIIGWKSLKKEQGIYEPSDNLFHDDARKFEIATSCIPLLAGLRNSLDLLDKDCHEKEKN
CCEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KNIKRLSGKLWDELNQSKGVELVLEKKYLNGIVSFNIENIKDKDKFVKELGGKKIWIRVL
CCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCEEEECCCCCCHHHHHHHHHCCCEEEEEEE
EDPKWFRACVHQMTTEAEIDLLAREIKNLT
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]