| Definition | Prochlorococcus marinus str. MIT 9301, complete genome. |
|---|---|
| Accession | NC_009091 |
| Length | 1,641,879 |
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The map label for this gene is uvrD [H]
Identifier: 126695666
GI number: 126695666
Start: 300518
End: 302926
Strand: Reverse
Name: uvrD [H]
Synonym: P9301_03281
Alternate gene names: 126695666
Gene position: 302926-300518 (Counterclockwise)
Preceding gene: 126695667
Following gene: 126695665
Centisome position: 18.45
GC content: 32.71
Gene sequence:
>2409_bases GTGCATCAAACCAACAATTTCCTTTTTAATTCCCTAAACAATCAACAACTCCAAGCAGTAAAACATGTTTATGGACCACT ATTAGTTGTAGCAGGTGCAGGTAGCGGAAAAACTAAGGCTCTTACTCACAGAATTGCAAACCTTATTGAGGGTAACTCTA TAGATCCTTATAACATTCTCGCAGTCACATTCACTAACAAAGCTGCTAAAGAAATGAAAGGAAGATTAGAGGTTCTTCTA GCCCAAGAATTAGCTTTTAATCAATTTGGTCAGCCTTGGACAACTCTCAAAGAAATTGATCAAAATCAATTAAGAACAAA CGTTCACCAAGAGAGGCTTCAGAACCTTTGGATAGGTACTTTCCATTCTTTATTTTCAAGACTTCTGAGATACGATATTG AAAAATATACCGATCCAGAAGGCCTAAAATGGACAAGGCAATTTTCAATTTACGATGAAACAGATTCTCAAACATTAGTA AAAGAAATTATCAGTCAAGATATGAGTCTTGACCCAAAAAGATATGATCCCAAAAAGATTAAAAGATTAATAAGTAATGC TAAAAATCAATGCTTAACTTCTAATGATCTTTTAGAAAAAGCAGAAAATAATTTTGATAAAACAGTTGCAGAAGCCTACA AAAGATATAGAATTTCGCTATCAAAAAATAATTCTTTAGACTTTGATGATCTTCTACTTTTGCCCGTTTTCTTATTGAGG CAAAATGATATAGTCCGTGATTACTGGCACAAAAGATTTAAACATATTTTAGTTGACGAATATCAAGATACAAATAGAAC ACAATATGAACTTATAAAATTAATTACAGCTGGAAATACTGAACCAAAAAAATTCTTCAATTGGGAAGATCGGTCAATTT TTGTAGTTGGGGATGCTGATCAAAGTATTTATAGTTTCAGAGCAGCTGACTTCAGAATTTTAATTGGTTTTCAAGAGGAT TTTAAAACTTCAATCAACGACGATACAAATTCATCTTTAATTAAATTAGAAGAAAATTATAGGTCATCTTCCAATATTCT TGATGCTGCAAACTCACTAATTGAAAACAACTCTGAAAGAATTGACAAAGTTTTAAAGGCTACTAAAGAAAAAGGGGAAC TTTTAACGTTACTCAGCTGTGATGATGAAATTTCCGAGGCAGAAGCAATTACAAATAAAATTAAATCACTCAATAACTAT AATCAAAACCCAATTTGGAAAAATTTTGCAATTTTATATCGAACCAGAGCTCAGTCGAGAGTATTAGAAGAATCTCTTGT AAGGTGGCGCATTCCTTATACAATTTTTGGAGGATTGCGTTTTTATGATAGGAGAGAAATTAAAGATGCGATAGCATATT TGAAAGTTCTGGTTAATTCTTCAGATAACGTTAGTCTTTTACGAATCATAAATGTTCCTAGAAGAGGGATTGGTAAGACT ACTATTCAAAAACTTAATGAACTATCCAATAGGTTAAATATTCCATTATGGGAGGTTCTTAATGATAAGCAAAGTCTTGA AGAAACAATAGGCCGATCATCAAAAGGAATTAATAAATTTACTGAAGTTATGAATGACCTACTGTGTTACCTAGAAAATT CAGGTCCCGCTCAACTACTACAACTTATTTTAGAAAAAAGTGGTTATTTAAGTGATTTACTCTCTAGTGGGACTGAAGAA TCTGAAGATAGAAGAAATAACTTACAAGAACTAATTAATGCAGCTACTCAATATGAAGAAGAAACAGAAAGTGGAGATGT AGAGGGATTTCTTTCTACAGCAGCCTTGACAACTGATAATGATACTAAGAAAAATAATCCTAACTCTGTAACTCTCATGA CTTTGCATAATAGTAAAGGTTTAGAATTTCAAAATGTTTTTATCACTGGGCTAGAACAAGGTCTCTTCCCTAGCCATAGA TCAATAGATACTCCATCACTTCTTGAAGAGGAAAGAAGATTATGCTACGTAGGTATTACTAGAGCTAAAGAGAGAGTTTT CTTAAGTCATGCCAGAGAAAGAAGATTATGGGGTGGAATGCGTGAAGCAACAATTCCTTCAATATTTCTTTCGGAAATAC CTGAAGATTTAATAGATGGCGAATTACCACAAACTGGTGGTGCTTCAATTAGAAGAGATTTGCATCTTGATCGTTTAACA AGAGTTGATCGAAACAATCCAAATGAATTTGTTAACAAACCAATAAATGCAGTAAGGAAATTATATTCAGGGCCAAGTAA AGGGAAAAGCTGGATAGTTGGAGATAAGCTAATTCACTCAAAATTTGGGAAAGGTGAAATTATACATATTTTTGGGAGTG GGGAAAAAATATCTTTGGCAGTAAAATTTGGTGATAAAGGAAGTAAAATTCTAGATCCCAGATTAGCTCCAATTCGTTAT GTAAGTTAA
Upstream 100 bases:
>100_bases AACAATAATGAACTTATAAATTTAAAAAAAGCGTTAGAAGATCTAGAAACAGAATCTGAATCGCATAGTAAAGTCTGATT TTTGAAAAACCCTTCCAAAA
Downstream 100 bases:
>100_bases AACTCATGAACGATATCTCTGATTACATCCAAGGGGAATTAATCAAAACTCCATTTAATCTATATAACCTTATTACAAAA TACATAGAATCTAATAAGAA
Product: UvrD/REP helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MHQTNNFLFNSLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKGRLEVLL AQELAFNQFGQPWTTLKEIDQNQLRTNVHQERLQNLWIGTFHSLFSRLLRYDIEKYTDPEGLKWTRQFSIYDETDSQTLV KEIISQDMSLDPKRYDPKKIKRLISNAKNQCLTSNDLLEKAENNFDKTVAEAYKRYRISLSKNNSLDFDDLLLLPVFLLR QNDIVRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQSIYSFRAADFRILIGFQED FKTSINDDTNSSLIKLEENYRSSSNILDAANSLIENNSERIDKVLKATKEKGELLTLLSCDDEISEAEAITNKIKSLNNY NQNPIWKNFAILYRTRAQSRVLEESLVRWRIPYTIFGGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKT TIQKLNELSNRLNIPLWEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLLQLILEKSGYLSDLLSSGTEE SEDRRNNLQELINAATQYEEETESGDVEGFLSTAALTTDNDTKKNNPNSVTLMTLHNSKGLEFQNVFITGLEQGLFPSHR SIDTPSLLEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLIDGELPQTGGASIRRDLHLDRLT RVDRNNPNEFVNKPINAVRKLYSGPSKGKSWIVGDKLIHSKFGKGEIIHIFGSGEKISLAVKFGDKGSKILDPRLAPIRY VS
Sequences:
>Translated_802_residues MHQTNNFLFNSLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKGRLEVLL AQELAFNQFGQPWTTLKEIDQNQLRTNVHQERLQNLWIGTFHSLFSRLLRYDIEKYTDPEGLKWTRQFSIYDETDSQTLV KEIISQDMSLDPKRYDPKKIKRLISNAKNQCLTSNDLLEKAENNFDKTVAEAYKRYRISLSKNNSLDFDDLLLLPVFLLR QNDIVRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQSIYSFRAADFRILIGFQED FKTSINDDTNSSLIKLEENYRSSSNILDAANSLIENNSERIDKVLKATKEKGELLTLLSCDDEISEAEAITNKIKSLNNY NQNPIWKNFAILYRTRAQSRVLEESLVRWRIPYTIFGGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKT TIQKLNELSNRLNIPLWEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLLQLILEKSGYLSDLLSSGTEE SEDRRNNLQELINAATQYEEETESGDVEGFLSTAALTTDNDTKKNNPNSVTLMTLHNSKGLEFQNVFITGLEQGLFPSHR SIDTPSLLEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLIDGELPQTGGASIRRDLHLDRLT RVDRNNPNEFVNKPINAVRKLYSGPSKGKSWIVGDKLIHSKFGKGEIIHIFGSGEKISLAVKFGDKGSKILDPRLAPIRY VS >Mature_802_residues MHQTNNFLFNSLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKGRLEVLL AQELAFNQFGQPWTTLKEIDQNQLRTNVHQERLQNLWIGTFHSLFSRLLRYDIEKYTDPEGLKWTRQFSIYDETDSQTLV KEIISQDMSLDPKRYDPKKIKRLISNAKNQCLTSNDLLEKAENNFDKTVAEAYKRYRISLSKNNSLDFDDLLLLPVFLLR QNDIVRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQSIYSFRAADFRILIGFQED FKTSINDDTNSSLIKLEENYRSSSNILDAANSLIENNSERIDKVLKATKEKGELLTLLSCDDEISEAEAITNKIKSLNNY NQNPIWKNFAILYRTRAQSRVLEESLVRWRIPYTIFGGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKT TIQKLNELSNRLNIPLWEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLLQLILEKSGYLSDLLSSGTEE SEDRRNNLQELINAATQYEEETESGDVEGFLSTAALTTDNDTKKNNPNSVTLMTLHNSKGLEFQNVFITGLEQGLFPSHR SIDTPSLLEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLIDGELPQTGGASIRRDLHLDRLT RVDRNNPNEFVNKPINAVRKLYSGPSKGKSWIVGDKLIHSKFGKGEIIHIFGSGEKISLAVKFGDKGSKILDPRLAPIRY VS
Specific function: Essential helicase [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=790, Percent_Identity=35.0632911392405, Blast_Score=437, Evalue=1e-123, Organism=Escherichia coli, GI48994965, Length=693, Percent_Identity=36.7965367965368, Blast_Score=358, Evalue=1e-100, Organism=Escherichia coli, GI1787196, Length=430, Percent_Identity=27.2093023255814, Blast_Score=96, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6322369, Length=784, Percent_Identity=27.6785714285714, Blast_Score=206, Evalue=9e-54, Organism=Saccharomyces cerevisiae, GI6324477, Length=728, Percent_Identity=23.6263736263736, Blast_Score=114, Evalue=6e-26,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 91837; Mature: 91837
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQTNNFLFNSLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNIL CCCCCCHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEE AVTFTNKAAKEMKGRLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQERLQNLWIGT EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FHSLFSRLLRYDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQDMSLDPKRYDPKKI HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHH KRLISNAKNQCLTSNDLLEKAENNFDKTVAEAYKRYRISLSKNNSLDFDDLLLLPVFLLR HHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHH QNDIVRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDAD CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCC QSIYSFRAADFRILIGFQEDFKTSINDDTNSSLIKLEENYRSSSNILDAANSLIENNSER CHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCCEEEEHHHCCCCCHHHHHHHHHHHCCHHH IDKVLKATKEKGELLTLLSCDDEISEAEAITNKIKSLNNYNQNPIWKNFAILYRTRAQSR HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH VLEESLVRWRIPYTIFGGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKT HHHHHHHHEECCHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHH TIQKLNELSNRLNIPLWEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLL HHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH QLILEKSGYLSDLLSSGTEESEDRRNNLQELINAATQYEEETESGDVEGFLSTAALTTDN HHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCC DTKKNNPNSVTLMTLHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSLLEEERRLCYVGIT CCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEHH RAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLIDGELPQTGGASIRRDLHLDRLT HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHH RVDRNNPNEFVNKPINAVRKLYSGPSKGKSWIVGDKLIHSKFGKGEIIHIFGSGEKISLA HCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHCCCCCCEEEEEECCCEEEEE VKFGDKGSKILDPRLAPIRYVS EEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHQTNNFLFNSLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNIL CCCCCCHHHHCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEE AVTFTNKAAKEMKGRLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQERLQNLWIGT EEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FHSLFSRLLRYDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQDMSLDPKRYDPKKI HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHH KRLISNAKNQCLTSNDLLEKAENNFDKTVAEAYKRYRISLSKNNSLDFDDLLLLPVFLLR HHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHH QNDIVRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDAD CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCC QSIYSFRAADFRILIGFQEDFKTSINDDTNSSLIKLEENYRSSSNILDAANSLIENNSER CHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCCEEEEHHHCCCCCHHHHHHHHHHHCCHHH IDKVLKATKEKGELLTLLSCDDEISEAEAITNKIKSLNNYNQNPIWKNFAILYRTRAQSR HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH VLEESLVRWRIPYTIFGGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKT HHHHHHHHEECCHHEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHH TIQKLNELSNRLNIPLWEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLL HHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH QLILEKSGYLSDLLSSGTEESEDRRNNLQELINAATQYEEETESGDVEGFLSTAALTTDN HHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCC DTKKNNPNSVTLMTLHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSLLEEERRLCYVGIT CCCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEEHH RAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLIDGELPQTGGASIRRDLHLDRLT HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHH RVDRNNPNEFVNKPINAVRKLYSGPSKGKSWIVGDKLIHSKFGKGEIIHIFGSGEKISLA HCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHCCCCCCEEEEEECCCEEEEE VKFGDKGSKILDPRLAPIRYVS EEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA