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The map label for this gene is rnb [H]

Identifier: 126455378

GI number: 126455378

Start: 3400607

End: 3402685

Strand: Reverse

Name: rnb [H]

Synonym: BURPS1106A_3497

Alternate gene names: 126455378

Gene position: 3402685-3400607 (Counterclockwise)

Preceding gene: 126453642

Following gene: 126451576

Centisome position: 85.31

GC content: 69.12

Gene sequence:

>2079_bases
GTGAACGTTTTCTTCGAGGAATCGGGCAGTTTCAAGGCGGGCAGCGTGCTGTCGCGCCAGGGCGACGCGTTTCAGGTCGA
ATTGCCGGGCGGCCGGCGCGCGAAGGTGCGCGCGAAGGACGTGCTGATCGAATTCGAGAAGCCCGCGGCGGGCGAGCTGA
TGCAGCAGGCGGACGAAGCCGCCCAACAGATCGATCTGGATTTCCTGTGGGAGTGCGCGCCCGCCGAGGAATTCGCGTAT
GCCGCGCTCGCCGACGAATATTTCGGCGCGAGCTACGGCCCCGTCGAGCGCGCGGCGCTCGTGCTGCGCCTGCACGGCGC
GCCCGTCTACTTCCGCCGCAAGGGGCGCGGCCAGTATCAGCGCGCGCCCGAGGAGCAGCTGAAAATGGCGCTGGCCGGGC
TCGAGCGCAAGCGCCAGCAGGCGCTCGTGCAAGCCGGCTACGAGGAGGAGCTGAAGGCGGGCAGGCTGCCCGACGCGTTC
GCGGGCAAGGCGCTCGGCCTGCTGACGAAGCCGGACAAGAACTCGATCGAATACAAGGCGCTCGATGCGGCGGCGCTCGC
GCGCGGCGTGTCGCCGGCGCGCCTGATGCTCGACTGCGGCGGCATTCCGTCGGCGCGCGCGCTGCACGAGGCGCGCTTTC
TCGCCGAATACTTCCCGCACGGCACGGGCTTTCCGGCCGTCGCGGTCGGCAAGCTGCCCGAGGATCTGCCGCGCGCGGAC
GTCAACGCGTTCTCGATCGACGACATCACGACGACCGAAATCGACGACGCGTTCTCCGTCGAGCACCTGTCCGACGGGCG
CGTGCGGATCGGCGTGCACATCGCGGCGCCCGCGCTCGGCATCGTGCGCGGCGATGCGGTCGACGCGATCGCGCGCGCGC
GGCTGTCGACCGTCTACATGCCGGGCGACAAGATCACGATGCTGCCGGACGACGTCGTCGACGTGTTCACGCTGAAGGAG
GGCGATTACCGCCCGGCGCTGTCGCTGTACATCATCGTCAAGCGCGACACGCAGGAAATCGTCGCGAACGAGACGCGCGC
CGAATACGTCTATGTGAAGAGCAACCTGCGGCACAACACGCTCGACGAGCTCGTCACCGAGGACGCACTCGCGGCGGGCA
CGGGCGATTATCCGCACAAGGACGACATCGCGGCGCTCTGGCCGCTCGCGCAGGCGCTCTTCGAGCGACGCCAGGTCGCG
CGCGCGGGCTACGGGCTCAAGCGCGAAGTGCAGCGCAACACCGATTACAACTTCTACGTCGAAGGCGAGCACGTGTCGAT
CACGCCGCGCCGGCGCGGCTCGCCGCTCGATCTCATCGTGTCCGAGCTCGCGATCCTCGCGAACTCGACATGGGGCGCGT
TCCTGCACGATCACAGCGTGCCGGGCATTTACCGCACGCAGCGCGCGTTCGGCATGCCGAGCGGGCCGAAGCGCACGCGC
ATGCAGACGAGCGCCGCGCCGCACGAGGGGCTCGGCGTGCCGCAGTACGCGTGGAGCACGTCGCCGCTGCGCCGCTACGT
CGACCTCGTCAACCAGTGGCAACTGCTCGCGTGCGTGCAGCACGGCGTCACCGCGAAGCTCGCCGCCCCGTTCAAGCAGA
AGGATGCGGATCTGTACGCGGTCGTGCAGGGTTTCGACGACACGTACGCCGCGTACGCCGACCACCAGCGCCGGATGGAG
TATTTCTGGTGCCTGCGCTGGATCAAGCAGGAAGGCCGCAAGCAGGTGAGCGCGACCGTCGTGAAGGGCGAGCTCGTGCG
CCTCGACGAAGTGCCGCTGCTGCTGCACGTGCCCGCGCTCGGCGTGCATGCGCGCGGCACGCGGGTGCTGCTCGACGTGA
TGTCGGTCGACGAGCTGACGATCGAGGCGTCGGTACGGCTCGTGAGCGTGCTCGATGCGCCGATGGTGTCGAGCGGCGAG
CCGGCCGACGAAGACGAGGACGCCGACGCGGCCGACGAGACGCTGCTCGACGCCGCCGACGAATCGGCGCAAGGCGAAGC
GGAAGCGCTCGCCGAGGCGGGCGGCGCGGCGAGCGGCAACGGCGAATCGTCCGCGAACGGCGAGGAACAATCGAAATGA

Upstream 100 bases:

>100_bases
GTGCGCGGCACGTCTGCACCCTATACACCACACGCGGCGTCGACGGCTTCCGAAGCGAAGCGCGGCGCGCGAAAGTCTGA
ACGAAAGACGAGAGTACCGA

Downstream 100 bases:

>100_bases
GCACGGCCGTCGAATCGGCAGCGCGCGCGCGCGATCGCTATGCGGTGATCGGCAATCCGATCGCGCACAGCAAATCGCCG
TTCATCCATTCGCGTTTCGC

Product: ribonuclease II (RNB)-like protein

Products: NA

Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II [H]

Number of amino acids: Translated: 692; Mature: 692

Protein sequence:

>692_residues
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAAGELMQQADEAAQQIDLDFLWECAPAEEFAY
AALADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALAGLERKRQQALVQAGYEEELKAGRLPDAF
AGKALGLLTKPDKNSIEYKALDAAALARGVSPARLMLDCGGIPSARALHEARFLAEYFPHGTGFPAVAVGKLPEDLPRAD
VNAFSIDDITTTEIDDAFSVEHLSDGRVRIGVHIAAPALGIVRGDAVDAIARARLSTVYMPGDKITMLPDDVVDVFTLKE
GDYRPALSLYIIVKRDTQEIVANETRAEYVYVKSNLRHNTLDELVTEDALAAGTGDYPHKDDIAALWPLAQALFERRQVA
RAGYGLKREVQRNTDYNFYVEGEHVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMPSGPKRTR
MQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQKDADLYAVVQGFDDTYAAYADHQRRME
YFWCLRWIKQEGRKQVSATVVKGELVRLDEVPLLLHVPALGVHARGTRVLLDVMSVDELTIEASVRLVSVLDAPMVSSGE
PADEDEDADAADETLLDAADESAQGEAEALAEAGGAASGNGESSANGEEQSK

Sequences:

>Translated_692_residues
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAAGELMQQADEAAQQIDLDFLWECAPAEEFAY
AALADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALAGLERKRQQALVQAGYEEELKAGRLPDAF
AGKALGLLTKPDKNSIEYKALDAAALARGVSPARLMLDCGGIPSARALHEARFLAEYFPHGTGFPAVAVGKLPEDLPRAD
VNAFSIDDITTTEIDDAFSVEHLSDGRVRIGVHIAAPALGIVRGDAVDAIARARLSTVYMPGDKITMLPDDVVDVFTLKE
GDYRPALSLYIIVKRDTQEIVANETRAEYVYVKSNLRHNTLDELVTEDALAAGTGDYPHKDDIAALWPLAQALFERRQVA
RAGYGLKREVQRNTDYNFYVEGEHVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMPSGPKRTR
MQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQKDADLYAVVQGFDDTYAAYADHQRRME
YFWCLRWIKQEGRKQVSATVVKGELVRLDEVPLLLHVPALGVHARGTRVLLDVMSVDELTIEASVRLVSVLDAPMVSSGE
PADEDEDADAADETLLDAADESAQGEAEALAEAGGAASGNGESSANGEEQSK
>Mature_692_residues
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAAGELMQQADEAAQQIDLDFLWECAPAEEFAY
AALADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQRAPEEQLKMALAGLERKRQQALVQAGYEEELKAGRLPDAF
AGKALGLLTKPDKNSIEYKALDAAALARGVSPARLMLDCGGIPSARALHEARFLAEYFPHGTGFPAVAVGKLPEDLPRAD
VNAFSIDDITTTEIDDAFSVEHLSDGRVRIGVHIAAPALGIVRGDAVDAIARARLSTVYMPGDKITMLPDDVVDVFTLKE
GDYRPALSLYIIVKRDTQEIVANETRAEYVYVKSNLRHNTLDELVTEDALAAGTGDYPHKDDIAALWPLAQALFERRQVA
RAGYGLKREVQRNTDYNFYVEGEHVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMPSGPKRTR
MQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQKDADLYAVVQGFDDTYAAYADHQRRME
YFWCLRWIKQEGRKQVSATVVKGELVRLDEVPLLLHVPALGVHARGTRVLLDVMSVDELTIEASVRLVSVLDAPMVSSGE
PADEDEDADAADETLLDAADESAQGEAEALAEAGGAASGNGESSANGEEQSK

Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction [H]

COG id: COG0557

COG function: function code K; Exoribonuclease R

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1787542, Length=355, Percent_Identity=27.887323943662, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011129
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013223
- InterPro:   IPR001900
- InterPro:   IPR022966
- InterPro:   IPR004476
- InterPro:   IPR011804 [H]

Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]

EC number: =3.1.13.1 [H]

Molecular weight: Translated: 75696; Mature: 75696

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAAGELMQQADEA
CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHH
AQQIDLDFLWECAPAEEFAYAALADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQ
HHHCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCEEEEECCCCCCC
RAPEEQLKMALAGLERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTKPDKNSIEYKA
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHCCCEEEEEECCCCCCCEEHH
LDAAALARGVSPARLMLDCGGIPSARALHEARFLAEYFPHGTGFPAVAVGKLPEDLPRAD
HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
VNAFSIDDITTTEIDDAFSVEHLSDGRVRIGVHIAAPALGIVRGDAVDAIARARLSTVYM
CCEEEECCCEECCCCCCCCHHCCCCCEEEEEEEEECCCHHEECCHHHHHHHHHHHHEEEE
PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVKRDTQEIVANETRAEYVYVKSNLRHNT
CCCEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCH
LDELVTEDALAAGTGDYPHKDDIAALWPLAQALFERRQVARAGYGLKREVQRNTDYNFYV
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE
EGEHVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMPSGPKRTR
ECCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCHHC
MQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQKDADLYA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEE
VVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSATVVKGELVRLDEVPLLLHVPAL
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCEEEECCCC
GVHARGTRVLLDVMSVDELTIEASVRLVSVLDAPMVSSGEPADEDEDADAADETLLDAAD
CCCCCCCEEEEEEHHHHHEEHHHHHHEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
ESAQGEAEALAEAGGAASGNGESSANGEEQSK
CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAAGELMQQADEA
CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHH
AQQIDLDFLWECAPAEEFAYAALADEYFGASYGPVERAALVLRLHGAPVYFRRKGRGQYQ
HHHCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCEEEEECCCCCCC
RAPEEQLKMALAGLERKRQQALVQAGYEEELKAGRLPDAFAGKALGLLTKPDKNSIEYKA
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHCCCEEEEEECCCCCCCEEHH
LDAAALARGVSPARLMLDCGGIPSARALHEARFLAEYFPHGTGFPAVAVGKLPEDLPRAD
HHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
VNAFSIDDITTTEIDDAFSVEHLSDGRVRIGVHIAAPALGIVRGDAVDAIARARLSTVYM
CCEEEECCCEECCCCCCCCHHCCCCCEEEEEEEEECCCHHEECCHHHHHHHHHHHHEEEE
PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVKRDTQEIVANETRAEYVYVKSNLRHNT
CCCEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCHHHHHHCCCCCEEEEEECCCCCCH
LDELVTEDALAAGTGDYPHKDDIAALWPLAQALFERRQVARAGYGLKREVQRNTDYNFYV
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE
EGEHVSITPRRRGSPLDLIVSELAILANSTWGAFLHDHSVPGIYRTQRAFGMPSGPKRTR
ECCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCHHC
MQTSAAPHEGLGVPQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKQKDADLYA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEE
VVQGFDDTYAAYADHQRRMEYFWCLRWIKQEGRKQVSATVVKGELVRLDEVPLLLHVPAL
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCEEEECCCC
GVHARGTRVLLDVMSVDELTIEASVRLVSVLDAPMVSSGEPADEDEDADAADETLLDAAD
CCCCCCCEEEEEEHHHHHEEHHHHHHEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
ESAQGEAEALAEAGGAASGNGESSANGEEQSK
CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA