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The map label for this gene is 126455327

Identifier: 126455327

GI number: 126455327

Start: 1252409

End: 1252969

Strand: Reverse

Name: 126455327

Synonym: BURPS1106A_1279

Alternate gene names: NA

Gene position: 1252969-1252409 (Counterclockwise)

Preceding gene: 126454102

Following gene: 126454392

Centisome position: 31.41

GC content: 62.39

Gene sequence:

>561_bases
ATGGCATCAGACAAGGAACTCGCGGACTTTCTGGCGGGCGTCGAAAGGCGCGCGTTCAAGCAGGCTGCATACGCGGTGCG
CGACGACGACGCGTCGCTCGACATCGTGCAGGACGCGATGATCCGGCTCGCGGAAAAATACGGCGACCGCCCGGCCGCCG
AATTGCCGCTGCTTTTTCAACGGATCCTTCAGAACGCGATCCACGATTATTTCCGCAGACAAAAGGTGCGCAACACCTGG
GTCAGCCTGTTCTCGTCGCTGAACAACACCGACGACGACGAGTTCGACCCGCTCGAGACGCTCGAATCGGCGGACGGCGA
CGGCGTCGAGAGCGGGGAGACGCGGCTCGAGCGCGAGCAGGTGCTCGCCCTCATCGACGATGAAATCCAGAAGCTTCCGG
CGCGTCAACGGGAAGCCTTCCTGATGCGTTATTGGGAGGATATGGATGTCGCCGAGACAGCCGCCGCCATGGGGTGCTCC
GAAGGCAGCGTCAAGACGCACTGCTCCCGGGCCACTCACGCATTGGCGTTGGCGCTCAAGGCCAAAGGAATCACGCTATG
A

Upstream 100 bases:

>100_bases
ACAGGATGCCGCGCGCCGCGAAAATTTGTTAGCATCCGCGAGTTTTACGAATTTTTTCCGATCTTTCACGCCGCAAGAAC
GCAGCGCAGACCTTCACGGA

Downstream 100 bases:

>100_bases
GCTCCGCTCCCGCTACGAAAGAAGAACTCGATTTCGCCCTCAAGGTGCGCCGCGCGCTCGACGAGCGCGCGGCCTCGCTG
CCCGCCGCGACGGCGGACCG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIRLAEKYGDRPAAELPLLFQRILQNAIHDYFRRQKVRNTW
VSLFSSLNNTDDDEFDPLETLESADGDGVESGETRLEREQVLALIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCS
EGSVKTHCSRATHALALALKAKGITL

Sequences:

>Translated_186_residues
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIRLAEKYGDRPAAELPLLFQRILQNAIHDYFRRQKVRNTW
VSLFSSLNNTDDDEFDPLETLESADGDGVESGETRLEREQVLALIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCS
EGSVKTHCSRATHALALALKAKGITL
>Mature_185_residues
ASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIRLAEKYGDRPAAELPLLFQRILQNAIHDYFRRQKVRNTWV
SLFSSLNNTDDDEFDPLETLESADGDGVESGETRLEREQVLALIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSE
GSVKTHCSRATHALALALKAKGITL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20883; Mature: 20751

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIRLAEKYGDRPAAELPLLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RILQNAIHDYFRRQKVRNTWVSLFSSLNNTDDDEFDPLETLESADGDGVESGETRLEREQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
VLALIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALALALK
HHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AKGITL
HCCCCC
>Mature Secondary Structure 
ASDKELADFLAGVERRAFKQAAYAVRDDDASLDIVQDAMIRLAEKYGDRPAAELPLLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RILQNAIHDYFRRQKVRNTWVSLFSSLNNTDDDEFDPLETLESADGDGVESGETRLEREQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH
VLALIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALALALK
HHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AKGITL
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA