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The map label for this gene is ygbF [H]

Identifier: 126455302

GI number: 126455302

Start: 3154424

End: 3155173

Strand: Direct

Name: ygbF [H]

Synonym: BURPS1106A_3243

Alternate gene names: 126455302

Gene position: 3154424-3155173 (Clockwise)

Preceding gene: 126454443

Following gene: 126455419

Centisome position: 79.09

GC content: 66.53

Gene sequence:

>750_bases
ATGACGCACCGTTTCCCCTGGCTGCGCACGGCCGCCGCGCTGTGCGTGGCCGGTGCGGCCCTCCTGGCCGCGCCGGCGCA
CGCGGGCCTCTTCGATGACGACGAAGCCCGCCGTGCGGTGCTCGATCTGCGCAGCAAGTCCGACAGCCAGGCGAGCCAGC
TCGCCGCGGCGCAACGCACGATCCTCGATCAGACCAACCGCCTCGACCAGTTGAACCAGCAGGTCGCGACGCTGCGCGGC
GAGAACGAGGACCTGACGAACCGCCTGACGACGCTCGAGCGCCAACAGAAGGAGTACTACACCGATCTCGATACGCGCCT
GAAGAAATTCGAGCCGCAGAAGACGACGGTGGACGGCGTCGAAGGCACGGTGCAGCCGGGTGAAACGGACGCGTTCAACG
CGGCGTCGCAACAGTTCCGCAACGGCAACTTCAAGGGCGCCGCGGCTTCGTTCCGCGCGTTCATCGCCAAATACCCGCAA
AGCCCCTATCAGCCGACCGCGCAATACTGGCTCGGCAACGCGCAGTACGCGCTGCGCGACTACAAGGGCTCGACGGCGAC
GTGGCAAGGCCTCGTGAAGAACTATCCGCAGCACCCGCGTGCGGCGGACGCGCTGATCGCGATCGGCACCAATCAACTCG
AGCAAGGCCAGAAGGCGGCCGCGAAGAAGACGTTCGAGCAGGTCGTGTCGCAGTTCCCGGGCTCGAATGCGGCGGAAACC
GCGCAGAGCAAGCTGGACGCGATCAAGTGA

Upstream 100 bases:

>100_bases
AAGGAAAAGCCGGTTGCGCTCGGCCACGACGAAGCGTCGTGGGCGCAGAACCGCCGTGCGGACCTCGTCTATCAACAGTA
AATAACGGAAGAATCGCTGT

Downstream 100 bases:

>100_bases
CGGCGCGCGACGCGGCCGATCGGTGGCTTGACACCCCCGCCGTTTGGCCGATATAATTTCGCCTCTTTTGGGTCGTTAGC
TCAGCTGGTAGAGCAGCGGA

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MTHRFPWLRTAAALCVAGAALLAAPAHAGLFDDDEARRAVLDLRSKSDSQASQLAAAQRTILDQTNRLDQLNQQVATLRG
ENEDLTNRLTTLERQQKEYYTDLDTRLKKFEPQKTTVDGVEGTVQPGETDAFNAASQQFRNGNFKGAAASFRAFIAKYPQ
SPYQPTAQYWLGNAQYALRDYKGSTATWQGLVKNYPQHPRAADALIAIGTNQLEQGQKAAAKKTFEQVVSQFPGSNAAET
AQSKLDAIK

Sequences:

>Translated_249_residues
MTHRFPWLRTAAALCVAGAALLAAPAHAGLFDDDEARRAVLDLRSKSDSQASQLAAAQRTILDQTNRLDQLNQQVATLRG
ENEDLTNRLTTLERQQKEYYTDLDTRLKKFEPQKTTVDGVEGTVQPGETDAFNAASQQFRNGNFKGAAASFRAFIAKYPQ
SPYQPTAQYWLGNAQYALRDYKGSTATWQGLVKNYPQHPRAADALIAIGTNQLEQGQKAAAKKTFEQVVSQFPGSNAAET
AQSKLDAIK
>Mature_248_residues
THRFPWLRTAAALCVAGAALLAAPAHAGLFDDDEARRAVLDLRSKSDSQASQLAAAQRTILDQTNRLDQLNQQVATLRGE
NEDLTNRLTTLERQQKEYYTDLDTRLKKFEPQKTTVDGVEGTVQPGETDAFNAASQQFRNGNFKGAAASFRAFIAKYPQS
PYQPTAQYWLGNAQYALRDYKGSTATWQGLVKNYPQHPRAADALIAIGTNQLEQGQKAAAKKTFEQVVSQFPGSNAAETA
QSKLDAIK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=102, Percent_Identity=39.2156862745098, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27396; Mature: 27264

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCC
>Mature Secondary Structure 
THRFPWLRTAAALCVAGAALLAAPAHAGLFDDDEARRAVLDLRSKSDSQASQLAAAQRT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
ILDQTNRLDQLNQQVATLRGENEDLTNRLTTLERQQKEYYTDLDTRLKKFEPQKTTVDGV
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EGTVQPGETDAFNAASQQFRNGNFKGAAASFRAFIAKYPQSPYQPTAQYWLGNAQYALRD
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHH
YKGSTATWQGLVKNYPQHPRAADALIAIGTNQLEQGQKAAAKKTFEQVVSQFPGSNAAET
CCCCHHHHHHHHHCCCCCCCHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AQSKLDAIK
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]