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The map label for this gene is yhjC [H]

Identifier: 126455277

GI number: 126455277

Start: 779407

End: 780654

Strand: Direct

Name: yhjC [H]

Synonym: BURPS1106A_0793

Alternate gene names: 126455277

Gene position: 779407-780654 (Clockwise)

Preceding gene: 126454514

Following gene: 126452431

Centisome position: 19.54

GC content: 66.91

Gene sequence:

>1248_bases
ATGCGCGCGGATGACTTCGGCGCTATCGATATCGGCGCCGATGTCGACACTGTTGCCGACACCGACACCGACACCGACAC
CGACACCGACACCGACACCGACACCGACACCGACATCGACATCGACATCGACATCGACATCGAAGCATCCGTCGGCGGAC
GCCCGACGCGCGTCTCCCCGACTATTCGCCGAAAGCGAATAGTCGCGAAGCGGCTTGAATCGCGGCCATCGCGTGCTCTA
TCCTGTCCTGTTGGCGATTCGAAGGGGGACGGCATGGACCGCATTCAGGCAATGGAAGTCTTCACACGCGTGGTCGATGC
GAACAGCTTCACGCGGGCCGCGGAGACGCTCGGGATGCCGCGCGCGTCGGTGACGACGATTATCCAGAATCTCGAGGCGC
TGCTCGGCGTGCGGCTGATGCACCGGACCACGCGCCGGCTGTCGCTGACGCCGGAAGGCGCCGCGTATTACGAGCACTGC
ATCAAGATCATCACCGAGATCGCGGAGACGGACGCGAGCTTTCAGGTCGGCAGCCGCAAGCCGAGCGGCGCGCTGCGCGT
GCACATGCCGAGCTCGCTCGGCCGGCGGCTCGTGATTCCCGCGCTGCCGGTCTTCCGCCAGCGCTACCCCGACATCGTGC
TCGATCTGGGGCTGTCCGACCGCCCCGTCGATCCGGTCGAAGAGGGGATCGATTGCATGATCCGCATCGGGCCGCTCGAG
GATTCGTCGATGGTCGCGCGGCGCATCGGGATGCTCAAGCGCGTCACCTGCGCGTCGCCCGATTACCTGAAGCGCTTCGG
CGAGCCCGCCGAGATCGCGGAGCTGGCCGCGCATCACGCGGTGAACTTTCGCGCGAGCCACGGCTCGCGGCCGGTGCCGT
GGGTGTTCGTGATCGACGGCAAGCCGGTCGAGGTCAGGTTGAACGGCGGCGTGACCGTCAACGATTCGGATGCCTATGTG
ACGTGCGGCGTCGAAGGCTTCGGAATGATCCAGCCGACGCTCTTCATGGTGCTGCCGCACCTGCTCGACGGCACGCTGCA
GGAGGTGCTGCCGGGCTTCAATCCGAAGCCGAAGCCGATCTCGATCGTCTATCCGAACAGCCGGCATCTGTCCGCGAAGG
TTCGCGTGTTCGCCGACTGGATCGCCGAGCTGTTCGATTCGACGCCCGCGCTCGAGGGCGGCGAGGACTGGCGCGGCAGC
GCCGCGGCGCGCACGGCGCCGGCGTCGCGCGGGCAGGTGGCCGCGTAG

Upstream 100 bases:

>100_bases
CATGGGTGAAGGGCGAGCCGCTGCCGCTGCTGCCGGGGCCGACCGAGCACACGCTGCGTTTCGTGCGTTGATTCGAGATG
CGAACGGCCGAGCGGTTTGG

Downstream 100 bases:

>100_bases
CGGCGCGCGCCCGGGCTCGGCGCATGCGGCATATGGCACGCGGCGTCGCGGGGCGCGCAGGGTGCATAGCCGGATGGGCT
TTCCGGATGCGCTTGCCGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MRADDFGAIDIGADVDTVADTDTDTDTDTDTDTDTDTDIDIDIDIDIEASVGGRPTRVSPTIRRKRIVAKRLESRPSRAL
SCPVGDSKGDGMDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHC
IKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLGLSDRPVDPVEEGIDCMIRIGPLE
DSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYV
TCGVEGFGMIQPTLFMVLPHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAELFDSTPALEGGEDWRGS
AAARTAPASRGQVAA

Sequences:

>Translated_415_residues
MRADDFGAIDIGADVDTVADTDTDTDTDTDTDTDTDTDIDIDIDIDIEASVGGRPTRVSPTIRRKRIVAKRLESRPSRAL
SCPVGDSKGDGMDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHC
IKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLGLSDRPVDPVEEGIDCMIRIGPLE
DSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYV
TCGVEGFGMIQPTLFMVLPHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAELFDSTPALEGGEDWRGS
AAARTAPASRGQVAA
>Mature_415_residues
MRADDFGAIDIGADVDTVADTDTDTDTDTDTDTDTDTDIDIDIDIDIEASVGGRPTRVSPTIRRKRIVAKRLESRPSRAL
SCPVGDSKGDGMDRIQAMEVFTRVVDANSFTRAAETLGMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHC
IKIITEIAETDASFQVGSRKPSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLGLSDRPVDPVEEGIDCMIRIGPLE
DSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELAAHHAVNFRASHGSRPVPWVFVIDGKPVEVRLNGGVTVNDSDAYV
TCGVEGFGMIQPTLFMVLPHLLDGTLQEVLPGFNPKPKPISIVYPNSRHLSAKVRVFADWIAELFDSTPALEGGEDWRGS
AAARTAPASRGQVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=40.9556313993174, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=32.3232323232323, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=29.0540540540541, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=30.4498269896194, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=30.3886925795053, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=28.4246575342466, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=29.8611111111111, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1789173, Length=143, Percent_Identity=33.5664335664336, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=22.0689655172414, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786448, Length=277, Percent_Identity=23.1046931407942, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 45170; Mature: 45170

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRADDFGAIDIGADVDTVADTDTDTDTDTDTDTDTDTDIDIDIDIDIEASVGGRPTRVSP
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCH
TIRRKRIVAKRLESRPSRALSCPVGDSKGDGMDRIQAMEVFTRVVDANSFTRAAETLGMP
HHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
RASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCIKIITEIAETDASFQVGSRK
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCC
PSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLGLSDRPVDPVEEGIDCMIRIGPLE
CCCEEEEECCHHCCCEEEECCCHHHHHHCCCEEEECCCCCCCCCHHHHCCEEEEEECCCC
DSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELAAHHAVNFRASHGSRPVPWVFVIDG
CHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCEEEEECC
KPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTLFMVLPHLLDGTLQEVLPGFNPKPKPI
CEEEEEECCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SIVYPNSRHLSAKVRVFADWIAELFDSTPALEGGEDWRGSAAARTAPASRGQVAA
EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
>Mature Secondary Structure
MRADDFGAIDIGADVDTVADTDTDTDTDTDTDTDTDTDIDIDIDIDIEASVGGRPTRVSP
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCH
TIRRKRIVAKRLESRPSRALSCPVGDSKGDGMDRIQAMEVFTRVVDANSFTRAAETLGMP
HHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
RASVTTIIQNLEALLGVRLMHRTTRRLSLTPEGAAYYEHCIKIITEIAETDASFQVGSRK
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCEEECCCC
PSGALRVHMPSSLGRRLVIPALPVFRQRYPDIVLDLGLSDRPVDPVEEGIDCMIRIGPLE
CCCEEEEECCHHCCCEEEECCCHHHHHHCCCEEEECCCCCCCCCHHHHCCEEEEEECCCC
DSSMVARRIGMLKRVTCASPDYLKRFGEPAEIAELAAHHAVNFRASHGSRPVPWVFVIDG
CHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCCEEEEECC
KPVEVRLNGGVTVNDSDAYVTCGVEGFGMIQPTLFMVLPHLLDGTLQEVLPGFNPKPKPI
CEEEEEECCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SIVYPNSRHLSAKVRVFADWIAELFDSTPALEGGEDWRGSAAARTAPASRGQVAA
EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]