| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126455259
Identifier: 126455259
GI number: 126455259
Start: 1708910
End: 1710136
Strand: Direct
Name: 126455259
Synonym: BURPS1106A_1749
Alternate gene names: NA
Gene position: 1708910-1710136 (Clockwise)
Preceding gene: 126453766
Following gene: 126453815
Centisome position: 42.85
GC content: 64.47
Gene sequence:
>1227_bases TTGTGGAAGGATTCCCAGAACATGACTGATCTTCGTCTTACCAAGCGGTTCGCAGCACTGCTTGCAACCGGCGCGTTCGT TGCCGGCTGCAGTTCGCCGTCGCCTACGAAAATCGACTACAAGAGCGACTCGAAATCGAAGGAGGTGTCGCTCGCGGTGC CGCCCAACATGCTCGACGAGACGCCGGATCAACGTTCTCTGCCGCCGCAGGGCGGCGCGACGTCGCTTTCCAGCCTGCAG CAGGTGCAGCAGGCCGCGCCGCCGACCGATTCGGTCGCGCCCGCCGTGCCGGGCATGCACATTCAGCGCGACGGCACCGA GAGCTGGCTCGTGATCGACGACAAGGCGCCCGCGCAAATCTGGCCTCAGGTGCGCCGCTTCTGGCAGGAGCAGGGTTTCC TGCTTGTCGTCGAGCAGCGCGACAAGGGCGTGATGGAAACTGACTGGAACGAAACGCATCCGCAGATCAACGACGGCCTG ATTCGCGGCGTGATCTCGAAGGCGATGGGCAACTCGTACGTGACGGCGGAGCGCAACAAGTACCGCACGCGCCTCGACGC CGCGCCGAACGGCGGCACCTACGTGTTCATCAGCCAGAAGGGAATGCGCGAGGCGCTGACGGGCGCGAACAACGATTCGA GCAAGTGGGAGCCGAAACCGAACGATCCCGGCCTCGAGACCGAATACCTGAAGCGCCTGATGGCCGTGATCGCGCAGAAC GACGCGCGCGTGAAGGCGGCAGGCGTGCCGATCACCGACGATGCGGCGCCGTCGCGCGCGAAGGCGTCGAGCAACAAGAG CAAGGAAGCGGCAGCGGCGATCGCCGCGAAGAACGTCGCGAGCGCGTCGACATCGAGCACACCGAGCGGAGCGTCGGTGC CGGACGTGCCGCCTGAAGTGACGCTCGCGGAACCGTACGATCGTTCGTGGCTGCATGTCGGCCTGGCGCTCGATCGCGCG AATTTCACGGTCGACGATCGCGATCGCACGAAGGGGCTGTACTACGTCCGCTACGTCGATCCGAAGGATCTGAGCGTCGA GGAGCAGGGCTTCTGGAGCCAGCTCTTCCACGGCAAGAAGGAGAAGAAGGCGAAGCAATACCTGGTCAACGTGAAGGCGG TGACCGAAGGCGAGACGCGCATCGCGGTGGTCGACGACAAGGGCAATGTCGATGCGTCGGCGCCCGCGCGGCAGATCATG TCGCTCCTCGTCAATCAGTTGCGCTGA
Upstream 100 bases:
>100_bases CCCGGGCGGCGAACAAGCGGGCGAACGAGACCCGCGCGCTTTTTGCACGGTCTGCCGCCGGACCGGTAAAATAGAAAGTT GACTCACGGAAAACGTGACC
Downstream 100 bases:
>100_bases AGTCGCCGTGGGCGGCCACCGCCGTCGAGCTGCGAAGCCCGCCGTATGGCGGGCTTTTTTTATTTGCACCCGCCGCCCGT GCGCGCTTGGGCGCCCGCGT
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MWKDSQNMTDLRLTKRFAALLATGAFVAGCSSPSPTKIDYKSDSKSKEVSLAVPPNMLDETPDQRSLPPQGGATSLSSLQ QVQQAAPPTDSVAPAVPGMHIQRDGTESWLVIDDKAPAQIWPQVRRFWQEQGFLLVVEQRDKGVMETDWNETHPQINDGL IRGVISKAMGNSYVTAERNKYRTRLDAAPNGGTYVFISQKGMREALTGANNDSSKWEPKPNDPGLETEYLKRLMAVIAQN DARVKAAGVPITDDAAPSRAKASSNKSKEAAAAIAAKNVASASTSSTPSGASVPDVPPEVTLAEPYDRSWLHVGLALDRA NFTVDDRDRTKGLYYVRYVDPKDLSVEEQGFWSQLFHGKKEKKAKQYLVNVKAVTEGETRIAVVDDKGNVDASAPARQIM SLLVNQLR
Sequences:
>Translated_408_residues MWKDSQNMTDLRLTKRFAALLATGAFVAGCSSPSPTKIDYKSDSKSKEVSLAVPPNMLDETPDQRSLPPQGGATSLSSLQ QVQQAAPPTDSVAPAVPGMHIQRDGTESWLVIDDKAPAQIWPQVRRFWQEQGFLLVVEQRDKGVMETDWNETHPQINDGL IRGVISKAMGNSYVTAERNKYRTRLDAAPNGGTYVFISQKGMREALTGANNDSSKWEPKPNDPGLETEYLKRLMAVIAQN DARVKAAGVPITDDAAPSRAKASSNKSKEAAAAIAAKNVASASTSSTPSGASVPDVPPEVTLAEPYDRSWLHVGLALDRA NFTVDDRDRTKGLYYVRYVDPKDLSVEEQGFWSQLFHGKKEKKAKQYLVNVKAVTEGETRIAVVDDKGNVDASAPARQIM SLLVNQLR >Mature_408_residues MWKDSQNMTDLRLTKRFAALLATGAFVAGCSSPSPTKIDYKSDSKSKEVSLAVPPNMLDETPDQRSLPPQGGATSLSSLQ QVQQAAPPTDSVAPAVPGMHIQRDGTESWLVIDDKAPAQIWPQVRRFWQEQGFLLVVEQRDKGVMETDWNETHPQINDGL IRGVISKAMGNSYVTAERNKYRTRLDAAPNGGTYVFISQKGMREALTGANNDSSKWEPKPNDPGLETEYLKRLMAVIAQN DARVKAAGVPITDDAAPSRAKASSNKSKEAAAAIAAKNVASASTSSTPSGASVPDVPPEVTLAEPYDRSWLHVGLALDRA NFTVDDRDRTKGLYYVRYVDPKDLSVEEQGFWSQLFHGKKEKKAKQYLVNVKAVTEGETRIAVVDDKGNVDASAPARQIM SLLVNQLR
Specific function: Unknown
COG id: COG3317
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44567; Mature: 44567
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWKDSQNMTDLRLTKRFAALLATGAFVAGCSSPSPTKIDYKSDSKSKEVSLAVPPNMLDE CCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCEEEEECCCHHHHC TPDQRSLPPQGGATSLSSLQQVQQAAPPTDSVAPAVPGMHIQRDGTESWLVIDDKAPAQI CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCHHH WPQVRRFWQEQGFLLVVEQRDKGVMETDWNETHPQINDGLIRGVISKAMGNSYVTAERNK HHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHH YRTRLDAAPNGGTYVFISQKGMREALTGANNDSSKWEPKPNDPGLETEYLKRLMAVIAQN HHHEECCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC DARVKAAGVPITDDAAPSRAKASSNKSKEAAAAIAAKNVASASTSSTPSGASVPDVPPEV CCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TLAEPYDRSWLHVGLALDRANFTVDDRDRTKGLYYVRYVDPKDLSVEEQGFWSQLFHGKK EECCCCCCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCHH EKKAKQYLVNVKAVTEGETRIAVVDDKGNVDASAPARQIMSLLVNQLR HHHHHHHEEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MWKDSQNMTDLRLTKRFAALLATGAFVAGCSSPSPTKIDYKSDSKSKEVSLAVPPNMLDE CCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCCCEEEEECCCHHHHC TPDQRSLPPQGGATSLSSLQQVQQAAPPTDSVAPAVPGMHIQRDGTESWLVIDDKAPAQI CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCHHH WPQVRRFWQEQGFLLVVEQRDKGVMETDWNETHPQINDGLIRGVISKAMGNSYVTAERNK HHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHH YRTRLDAAPNGGTYVFISQKGMREALTGANNDSSKWEPKPNDPGLETEYLKRLMAVIAQN HHHEECCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC DARVKAAGVPITDDAAPSRAKASSNKSKEAAAAIAAKNVASASTSSTPSGASVPDVPPEV CCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TLAEPYDRSWLHVGLALDRANFTVDDRDRTKGLYYVRYVDPKDLSVEEQGFWSQLFHGKK EECCCCCCCEEEEEEEEECCCCEECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCHH EKKAKQYLVNVKAVTEGETRIAVVDDKGNVDASAPARQIMSLLVNQLR HHHHHHHEEEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]