Definition Burkholderia pseudomallei 1106a chromosome I, complete genome.
Accession NC_009076
Length 3,988,455

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The map label for this gene is 126455215

Identifier: 126455215

GI number: 126455215

Start: 1167440

End: 1169272

Strand: Reverse

Name: 126455215

Synonym: BURPS1106A_1189

Alternate gene names: NA

Gene position: 1169272-1167440 (Counterclockwise)

Preceding gene: 126453240

Following gene: 126454902

Centisome position: 29.32

GC content: 70.1

Gene sequence:

>1833_bases
ATGCCCGCCCTCATCGAAGACTACGCTCTCGTCGGCGACGGCCACACGGCCGCGCTGATTTCCCGCGACGGCTCGGTCGA
CTGGCTGTGCTGGCCCCGTTTCGATTCGGGCGCGTGCTTCGCCGCGCTCGTCGGCACGCCCGAGCACGGCCGCTGGCTCG
TCGCGCCCGCGGACGACGTGCGCGTGAGCGCGACGTCGCGCCGCTACCGCGGCGACACGCTGATCCTCGAAACCGACTAC
GAGTGCGACGAAGGCGCCGTCACCGTGATCGATTTCATGCCGCCCGGCAGCGGCTGGTCCGAGCTCGTGCGCATCGTCGT
CGGCCGGCGCGGCGAGATGCGCATGCAGATGCAGCTCGTGTTGCGCTTCGACTACGGCTTCTCGGTGCCGTGGGTCACGC
GGCTGCCGCGCGAGGCGGGCGTGAAGGCGATCGCCGGCCCGGACACGGTCGTGCTGCGCACGCCCGTGCCGCTTTCGGGC
GAGAACCTGCATACGGTGGCCGAATTCACGGTGAAGGCGGAGGAGCGCGTGCCGTTCTCGCTGTCGTACGCGCCGTCGCA
TCTGCGGCTGCCGCCCGCGCGCGAGCCGCTGTCGATGCTCGCGCGCACCGAGAACTACTGGCTCGAATGGTCGGCGCGAT
GCCCGCTGCGCGGCCGCTACGCGAGCGCCGTGCGACGCTCGCTGATCACGCTGAAGGCGCTCGCGTACGAGCCGACGGGC
GGCATCGTCGCCGCGCCGACGACCTCGCTGCCCGAGCAGTTGGGCGGCACCCGCAACTGGGACTACCGCTATTGCTGGCT
GCGCGACGCGACGATCACGCTGCTCGCGTTGATGCGCGGCGGCTACTACGACGAGGCGCGCGCGTGGCGTACGTGGCTCG
GCCGCGTGATGGCGGGCTCGCCCGAGCAGATTCAGATCATGTACGGGATCGCGGGCGAGCGGCGCCTGCCCGAAATGGAG
CTCGACTGGCTGCCGGGCTACCAGGATTCGCGGCCGGTGCGCATCGGCAACAACGCGGCGAACCAGTTGCAGCTCGACGT
GTTCGGCGAGGTGATGTCCGCGCTGCACATCGCGCGCGTGGGCGGGCTGCAGGCGGACGACACGGTGTGGTCGGTCCAGA
CGACGCTGCTCGCGCACCTCGAGAAGATCTGGCGCGAGCCGGACGAAGGCATCTGGGAGACGCGCGGCGGCCGCCGGCAT
TTCACGTTCTCGAAAGTGATGGCGTGGGTCGCGTTCGACCGCGCGATCAAGTCGGCCGAGATGTTCCGCCTGTCCGCGCC
GCTCGAGCGCTGGCGCGCGATCCGCGACGAGATCCACGCGGACGTTTGCGCGAACGGCTGGAATCCGCGGGTGCGCGCGT
TCACGCAGAGCTATGGCAGCGACGCGCTCGACGCGAGCGTGCTGATGCTGCCGCTCGTCGGTTTCCTGCCGCCCGACGAT
CCGCGCATCGCGGACACCGTCGAGGCGATCGAGCGCGGCCTGATGCGCGACGGCCTCGTGCTGCGCTACCATACGACCGA
ATACGACGACGGCCTGCCGCCCGGCGAAGGCACGTTTCTCGCGTGCAGCTTCTGGCTCGTCGACAATCTCGCGCTCCTCG
GCCGCATCGACGACGCGCACGCGCTCTTTCGCCGCCTGCTGTCGCTCACGAACGATCTCGGCTTGCTCGCCGAGGAATAC
GATCCCGTGACGCGCCGCCAGGTAGGGAATTTCCCGCAGGCGTTCTCGCATGTCGGGCTCGTGCACACCGCGTTCAACCT
GATGCATCACGAAGAGGAAATGCTGCGCGCGGCCGGCCAGCCTGCCGCGGCGGACGCCGTCGCCGGGCGCTAG

Upstream 100 bases:

>100_bases
CGCCGTCCGCCGAGTATACGGGCCCGTGCTTGCCGCCGTACAGCGCGGCGCGAACGTGCCCAGATCGTGAACGACAAGGA
TTGCTGGAGGATCGTCGCCC

Downstream 100 bases:

>100_bases
GGCCCGTGCACGTTTGCACGGCAAACGTAAGACAAGGTCAGATGTCGATGCGACGCCCGGAAATGCGGGTTTGCTGCATT
GCGACACCCCGGAATGTCCG

Product: glycosy hydrolase family protein

Products: NA

Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycosy Hydrolase Family Protein; Glycoside Hydrolase Family; Trehalose-Phosphatase; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Trehalose Phosphatase; Glycosyl Hydrolase Glucoamylase; Glucoamylase Or Related Glycosyl Hydrolase; Six-Hairpin Glycosidase-Like Protein; Trehalose 6-Phosphatase; Trehalose-Phosphatase/ Glycoside Hydrolase; Glucoamylase Or Related Glycosyl Hydrolase Protein; HAD Family Hydrolase; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Protein; Trehalose-6-Phosphate Phophatase

Number of amino acids: Translated: 610; Mature: 609

Protein sequence:

>610_residues
MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDVRVSATSRRYRGDTLILETDY
ECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLVLRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSG
ENLHTVAEFTVKAEERVPFSLSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG
GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME
LDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARVGGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRH
FTFSKVMAWVAFDRAIKSAEMFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD
PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAHALFRRLLSLTNDLGLLAEEY
DPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQPAAADAVAGR

Sequences:

>Translated_610_residues
MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDVRVSATSRRYRGDTLILETDY
ECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLVLRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSG
ENLHTVAEFTVKAEERVPFSLSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG
GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEME
LDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARVGGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRH
FTFSKVMAWVAFDRAIKSAEMFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD
PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAHALFRRLLSLTNDLGLLAEEY
DPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQPAAADAVAGR
>Mature_609_residues
PALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDVRVSATSRRYRGDTLILETDYE
CDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLVLRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSGE
NLHTVAEFTVKAEERVPFSLSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTGG
IVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGSPEQIQIMYGIAGERRLPEMEL
DWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARVGGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRHF
TFSKVMAWVAFDRAIKSAEMFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDDP
RIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAHALFRRLLSLTNDLGLLAEEYD
PVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQPAAADAVAGR

Specific function: Unknown

COG id: COG3387

COG function: function code G; Glucoamylase and related glycosyl hydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68232; Mature: 68100

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDV
CCCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCC
RVSATSRRYRGDTLILETDYECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLV
EEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
LRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSGENLHTVAEFTVKAEERVPFS
EEECCCCCCCHHHHCCHHHCCEEECCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCEE
LSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG
EEECCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCC
GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS
CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
PEQIQIMYGIAGERRLPEMELDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARV
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH
GGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
MFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD
HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAH
CCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCHHHHCCCCHHH
ALFRRLLSLTNDLGLLAEEYDPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAAADAVAGR
CCCCHHCCCC
>Mature Secondary Structure 
PALIEDYALVGDGHTAALISRDGSVDWLCWPRFDSGACFAALVGTPEHGRWLVAPADDV
CCCCCCEEEECCCCEEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCC
RVSATSRRYRGDTLILETDYECDEGAVTVIDFMPPGSGWSELVRIVVGRRGEMRMQMQLV
EEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
LRFDYGFSVPWVTRLPREAGVKAIAGPDTVVLRTPVPLSGENLHTVAEFTVKAEERVPFS
EEECCCCCCCHHHHCCHHHCCEEECCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCCEE
LSYAPSHLRLPPAREPLSMLARTENYWLEWSARCPLRGRYASAVRRSLITLKALAYEPTG
EEECCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEECCCC
GIVAAPTTSLPEQLGGTRNWDYRYCWLRDATITLLALMRGGYYDEARAWRTWLGRVMAGS
CEEECCCCCCHHHHCCCCCCCEEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
PEQIQIMYGIAGERRLPEMELDWLPGYQDSRPVRIGNNAANQLQLDVFGEVMSALHIARV
CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHH
GGLQADDTVWSVQTTLLAHLEKIWREPDEGIWETRGGRRHFTFSKVMAWVAFDRAIKSAE
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
MFRLSAPLERWRAIRDEIHADVCANGWNPRVRAFTQSYGSDALDASVLMLPLVGFLPPDD
HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
PRIADTVEAIERGLMRDGLVLRYHTTEYDDGLPPGEGTFLACSFWLVDNLALLGRIDDAH
CCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCHHHHCCCCHHH
ALFRRLLSLTNDLGLLAEEYDPVTRRQVGNFPQAFSHVGLVHTAFNLMHHEEEMLRAAGQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PAAADAVAGR
CCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA