| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
Click here to switch to the map view.
The map label for this gene is phnL [H]
Identifier: 126455192
GI number: 126455192
Start: 3263543
End: 3264340
Strand: Reverse
Name: phnL [H]
Synonym: BURPS1106A_3340
Alternate gene names: 126455192
Gene position: 3264340-3263543 (Counterclockwise)
Preceding gene: 126454070
Following gene: 126452299
Centisome position: 81.84
GC content: 72.93
Gene sequence:
>798_bases ATGCAAACCATCGAATCGTCCCGCCGCGCCCGCGATCACGATCACGCCCGCGCGTTCGCCGGCAACGCGGCGCTGATGCT GCGCGCGGTCGGCGTCGGCAAGACGTTCACGCTGCATGCGCACGGCGGCATGACGATCGACGCGCTCGAGAACGTGTCGC TCGATGTCGAAGCGGGCGAGTGCGTCGCGCTCACGGGGCCGTCCGGCGCGGGCAAGAGCACGCTGCTGCGGTGCCTGTAC GGCAACTATCTCGCGAACCGCGGCACGATCGCGGTGCGCGTCGGCACGCGCGCGGCGGAGCACGTCGTGCTGACGGCGTC CGAGCCGCACGAGGTGATCGCGCTGCGGCGCGACGTGATCGGCTACGTCAGCCAGTTCCTGCGGGCGATTCCGCGGGTGC CGGCGCTCGCGCTCGTCGCCGCGCCGCTCGTCGCGCGCGGCATGCCCGAAGGCGAGGCGGCCGATCGCGCGGCGCATCTG CTCGCGCGCCTGAACGTGCCGCGCCGGCTGTGGACGCTCGCGCCCGCGACGTTTTCGGGCGGCGAGCAGCAGCGCGTGAA CATCGCGCGCGGGCTGATCGCCGAGCATCCGGTGCTGCTGCTCGACGAGCCGACGGCGTCGCTCGACGCGGAGAATCGCG ACGTCGTCGCCGAGCTGATCGGCGACGTGCGCCGGCGCGGCGCGGCGATCGTCGGCATCTTTCACGACGAAGCGACGCGC GAGCGCGTCGCGACGCGCTGTTTCCCGCTGCGCCCGCCGTCGCGCGCGCGGCTGCCCTTTGACGAAGTGAACGCTTAG
Upstream 100 bases:
>100_bases AGATCGTCGAGGCGGGGCTGACCGATCAGGTGCTCGACGATCCGCAACATCCGTACACGCAAATGCTCGTGTCGTCCGTT CTACCGGTATGAGGTTCGGC
Downstream 100 bases:
>100_bases CGGAGCGAACGATGTTGATCAGCAATGCGCGCGTCGTCACGCGCGACGACGTTTTCATCGGCACCGTGCAGATCGACGGC GAATCGATCCGCGCGGTGTC
Product: phosphonate C-P lyase system protein PhnL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MQTIESSRRARDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGECVALTGPSGAGKSTLLRCLY GNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVIGYVSQFLRAIPRVPALALVAAPLVARGMPEGEAADRAAHL LARLNVPRRLWTLAPATFSGGEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR ERVATRCFPLRPPSRARLPFDEVNA
Sequences:
>Translated_265_residues MQTIESSRRARDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGECVALTGPSGAGKSTLLRCLY GNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVIGYVSQFLRAIPRVPALALVAAPLVARGMPEGEAADRAAHL LARLNVPRRLWTLAPATFSGGEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR ERVATRCFPLRPPSRARLPFDEVNA >Mature_265_residues MQTIESSRRARDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGECVALTGPSGAGKSTLLRCLY GNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVIGYVSQFLRAIPRVPALALVAAPLVARGMPEGEAADRAAHL LARLNVPRRLWTLAPATFSGGEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR ERVATRCFPLRPPSRARLPFDEVNA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=231, Percent_Identity=29.4372294372294, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27881501, Length=206, Percent_Identity=28.6407766990291, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI30795238, Length=206, Percent_Identity=28.6407766990291, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI42741659, Length=206, Percent_Identity=31.5533980582524, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=26.6331658291457, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI150417984, Length=208, Percent_Identity=29.8076923076923, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI9961250, Length=206, Percent_Identity=30.0970873786408, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=206, Percent_Identity=30.0970873786408, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=206, Percent_Identity=30.0970873786408, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1790534, Length=225, Percent_Identity=56, Blast_Score=246, Evalue=9e-67, Organism=Escherichia coli, GI1787029, Length=209, Percent_Identity=35.4066985645933, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=34.7826086956522, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789672, Length=201, Percent_Identity=34.3283582089552, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1787105, Length=225, Percent_Identity=34.2222222222222, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786398, Length=220, Percent_Identity=33.6363636363636, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=35.8851674641148, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787089, Length=202, Percent_Identity=36.1386138613861, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788225, Length=187, Percent_Identity=36.3636363636364, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1790544, Length=242, Percent_Identity=32.6446280991736, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI145693107, Length=207, Percent_Identity=34.7826086956522, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787500, Length=206, Percent_Identity=30.0970873786408, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789962, Length=228, Percent_Identity=29.3859649122807, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1788644, Length=211, Percent_Identity=32.7014218009479, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI48995001, Length=233, Percent_Identity=31.3304721030043, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87081791, Length=200, Percent_Identity=32.5, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=31.1926605504587, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=32.512315270936, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=32.1266968325792, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786698, Length=194, Percent_Identity=31.9587628865979, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789864, Length=217, Percent_Identity=29.0322580645161, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788761, Length=203, Percent_Identity=30.5418719211823, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786253, Length=198, Percent_Identity=31.8181818181818, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994883, Length=200, Percent_Identity=30, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1789991, Length=220, Percent_Identity=28.6363636363636, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=29.8913043478261, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1788450, Length=190, Percent_Identity=32.1052631578947, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=32.48730964467, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788210, Length=212, Percent_Identity=28.7735849056604, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787758, Length=221, Percent_Identity=27.1493212669683, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786803, Length=226, Percent_Identity=30.5309734513274, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI87081709, Length=178, Percent_Identity=32.0224719101124, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI48994997, Length=208, Percent_Identity=29.8076923076923, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=30.1980198019802, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787143, Length=212, Percent_Identity=29.2452830188679, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787370, Length=209, Percent_Identity=29.1866028708134, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790190, Length=193, Percent_Identity=27.4611398963731, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787759, Length=214, Percent_Identity=29.9065420560748, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787112, Length=200, Percent_Identity=28.5, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=26.7942583732057, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17558664, Length=194, Percent_Identity=32.4742268041237, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533592, Length=203, Percent_Identity=33.0049261083744, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569145, Length=202, Percent_Identity=29.7029702970297, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17569143, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17541710, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19920532, Length=205, Percent_Identity=29.7560975609756, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24580930, Length=205, Percent_Identity=29.7560975609756, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357907, Length=189, Percent_Identity=35.4497354497354, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI85725262, Length=186, Percent_Identity=28.494623655914, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 28471; Mature: 28471
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTIESSRRARDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGE CCCCHHHHHHCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCCEEEEHHCCCEEEECCCC CVALTGPSGAGKSTLLRCLYGNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVI EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHH GYVSQFLRAIPRVPALALVAAPLVARGMPEGEAADRAAHLLARLNVPRRLWTLAPATFSG HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHEECCCCCCC GEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH ERVATRCFPLRPPSRARLPFDEVNA HHHHHHHCCCCCCCCCCCCHHHCCC >Mature Secondary Structure MQTIESSRRARDHDHARAFAGNAALMLRAVGVGKTFTLHAHGGMTIDALENVSLDVEAGE CCCCHHHHHHCCHHHHHHHCCCCEEEEEEECCCCEEEEEECCCEEEEHHCCCEEEECCCC CVALTGPSGAGKSTLLRCLYGNYLANRGTIAVRVGTRAAEHVVLTASEPHEVIALRRDVI EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHH GYVSQFLRAIPRVPALALVAAPLVARGMPEGEAADRAAHLLARLNVPRRLWTLAPATFSG HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHEECCCCCCC GEQQRVNIARGLIAEHPVLLLDEPTASLDAENRDVVAELIGDVRRRGAAIVGIFHDEATR CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH ERVATRCFPLRPPSRARLPFDEVNA HHHHHHHCCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]