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The map label for this gene is ybbO [C]

Identifier: 126455145

GI number: 126455145

Start: 3188839

End: 3189627

Strand: Reverse

Name: ybbO [C]

Synonym: BURPS1106A_3273

Alternate gene names: 126455145

Gene position: 3189627-3188839 (Counterclockwise)

Preceding gene: 126452213

Following gene: 126454350

Centisome position: 79.97

GC content: 69.2

Gene sequence:

>789_bases
GTGAGCGACAGTGCCGGGCCGCGGCATATCGCGATCACGGGCGCGAGCGCCGGCCTCGGGCGCGCGCTGGCCCGGGCGTA
CGCGCGGCCCGGGGTGGTGCTGAGCCTCGGCGGACGCGACGCGGTGCGCCTCGAGGAAAGCGCCGCCGATTGTCGTGCCC
GCGGCGCCACGGTTTTCGTCGCGAGCATTGACGTCCGCGACGCCGATGCGATGCGGCGGTGGCTCGAACAGTTCGACGAC
GCGCACCCGATCCACCTGCTGATCGCCAATGCCGGCGTGGCCAGTACGCTCGCGCACGGCGGCGACTGGGAGGCGCGCGA
GCGCACCGCGGCAATCGTCGATACGAATTTCTACGGCGCGATGAATGCCGTACTGCCGGTCATCGATCGGATGCGCGCGC
GCGGTAGCGGGCAGGTCGCGCTGATCAGCTCGCTCGCGGCGCTGCGAGGCATGGCGATTTCACCCGCCTATTGCGCGAGC
AAGGCGGCGTTGAAGGCATGGGGCGACTCGGTGCGTCCCGTGCTCAAACGCGACGGTATTCGCCTGTCCGTCGTTTTGCC
GGGGTTCGTCAAGACGGCGATGAGCGATGTGTTCCCCGCAGACAAGCCTCTGCTCTGGTCGCCCGACAAGGCTGCGCAGT
ACATACAGCGCGGGATCGCCGCCCGGCGCGCTGAAATTGCGTTCCCCGCTCTGCTCGCGCTCGGCATGCGGCTGCTCCCG
CTGTTGCCCGCGGTGATGGCGGATGCGATCCTCGGTCGATTGTCCTATTTGCCGCGCGAGGAGCGATAG

Upstream 100 bases:

>100_bases
ACTACGTGATGCACCATACGCAGATCAACGGAGATTTCTATACGCGCACCGGTATAGAGATGAGCGTCGCCGGCGCCGTG
AGCCGGCTCGAGGCGGTGTC

Downstream 100 bases:

>100_bases
CGTGGCGTCGTCGATGCCGATCACATTCGTCTTTGCCATTGCCCTGTCATTTGCCGCAGATGCGATTGCAATTCCCCGCG
CCGCCGTTCGCCGTCCGTTC

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSDSAGPRHIAITGASAGLGRALARAYARPGVVLSLGGRDAVRLEESAADCRARGATVFVASIDVRDADAMRRWLEQFDD
AHPIHLLIANAGVASTLAHGGDWEARERTAAIVDTNFYGAMNAVLPVIDRMRARGSGQVALISSLAALRGMAISPAYCAS
KAALKAWGDSVRPVLKRDGIRLSVVLPGFVKTAMSDVFPADKPLLWSPDKAAQYIQRGIAARRAEIAFPALLALGMRLLP
LLPAVMADAILGRLSYLPREER

Sequences:

>Translated_262_residues
MSDSAGPRHIAITGASAGLGRALARAYARPGVVLSLGGRDAVRLEESAADCRARGATVFVASIDVRDADAMRRWLEQFDD
AHPIHLLIANAGVASTLAHGGDWEARERTAAIVDTNFYGAMNAVLPVIDRMRARGSGQVALISSLAALRGMAISPAYCAS
KAALKAWGDSVRPVLKRDGIRLSVVLPGFVKTAMSDVFPADKPLLWSPDKAAQYIQRGIAARRAEIAFPALLALGMRLLP
LLPAVMADAILGRLSYLPREER
>Mature_261_residues
SDSAGPRHIAITGASAGLGRALARAYARPGVVLSLGGRDAVRLEESAADCRARGATVFVASIDVRDADAMRRWLEQFDDA
HPIHLLIANAGVASTLAHGGDWEARERTAAIVDTNFYGAMNAVLPVIDRMRARGSGQVALISSLAALRGMAISPAYCASK
AALKAWGDSVRPVLKRDGIRLSVVLPGFVKTAMSDVFPADKPLLWSPDKAAQYIQRGIAARRAEIAFPALLALGMRLLPL
LPAVMADAILGRLSYLPREER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40807363, Length=248, Percent_Identity=31.4516129032258, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI210032110, Length=260, Percent_Identity=25.3846153846154, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI7657478, Length=199, Percent_Identity=31.1557788944724, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI20149619, Length=278, Percent_Identity=25.1798561151079, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40548397, Length=217, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI214010158, Length=217, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI214010156, Length=217, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI22758144, Length=217, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1786701, Length=267, Percent_Identity=25.0936329588015, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082100, Length=192, Percent_Identity=32.2916666666667, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787820, Length=200, Percent_Identity=29, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=197, Percent_Identity=34.010152284264, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=23.5897435897436, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=247, Percent_Identity=25.5060728744939, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=247, Percent_Identity=25.5060728744939, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=199, Percent_Identity=28.643216080402, Blast_Score=67, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=32.994923857868, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=34.010152284264, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=30.9644670050761, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24649181, Length=274, Percent_Identity=24.8175182481752, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=26.984126984127, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21356301, Length=188, Percent_Identity=28.1914893617021, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27875; Mature: 27743

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSAGPRHIAITGASAGLGRALARAYARPGVVLSLGGRDAVRLEESAADCRARGATVFV
CCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHCCCEEEE
ASIDVRDADAMRRWLEQFDDAHPIHLLIANAGVASTLAHGGDWEARERTAAIVDTNFYGA
EEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCHHHHEEEEEECCHHHH
MNAVLPVIDRMRARGSGQVALISSLAALRGMAISPAYCASKAALKAWGDSVRPVLKRDGI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCC
RLSVVLPGFVKTAMSDVFPADKPLLWSPDKAAQYIQRGIAARRAEIAFPALLALGMRLLP
EEEEECCHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPAVMADAILGRLSYLPREER
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDSAGPRHIAITGASAGLGRALARAYARPGVVLSLGGRDAVRLEESAADCRARGATVFV
CCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHCCCEEEE
ASIDVRDADAMRRWLEQFDDAHPIHLLIANAGVASTLAHGGDWEARERTAAIVDTNFYGA
EEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCHHHHEEEEEECCHHHH
MNAVLPVIDRMRARGSGQVALISSLAALRGMAISPAYCASKAALKAWGDSVRPVLKRDGI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCC
RLSVVLPGFVKTAMSDVFPADKPLLWSPDKAAQYIQRGIAARRAEIAFPALLALGMRLLP
EEEEECCHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLPAVMADAILGRLSYLPREER
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1730672 [H]