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The map label for this gene is ycfD [H]

Identifier: 126455075

GI number: 126455075

Start: 2577224

End: 2578411

Strand: Direct

Name: ycfD [H]

Synonym: BURPS1106A_2615

Alternate gene names: 126455075

Gene position: 2577224-2578411 (Clockwise)

Preceding gene: 126451922

Following gene: 126452545

Centisome position: 64.62

GC content: 65.99

Gene sequence:

>1188_bases
GTGCGCGAACGCACTCGCGCGCCGTTGTCCGAGGCGCCGACCCCGCTTCTCGGCAATCTCAGCCCCGCGCAATTCATGCG
CCGATATTGGCAGAAAAAGCCGCTTCTGATTCGACAGGCGATTACCGGCATCGCGCCGCCGCTGTCGCGCGACGCGCTGT
TCGAGCTTGCCGCCGACTATGACGTCGAATCGCGTCTCGTCACTCATTTTCGTAACAGATGGCAACTGGAGCATGGGCCG
TTCGAGCCCGAGTACTTGCCGTCCGTGAAGCGCCGCGAGTGGACGCTGCTCGTGCAGGGGCTCGATCTGCACGACGATCG
CGCCCGCGCGCTGCTCGAACGCTTCCGGTTCGTTCCGGATGCGCGCCTCGACGACCTGATGATCTCGTACGCGACCGACG
GCGGCGGCGTCGGCCCGCATTTCGACTCGTACGACGTGTTTCTGCTGCAGGTGCACGGCAAGCGCCGCTGGCGAATCGGC
GCGCAGCAGGATCTGTCGCTGCAGGAAGGCTTGCCGCTCAAGATCCTCGCGAATTTCGAGCCCACCGACGAATGGGTGCT
CGAACCCGGCGACATGCTGTATCTGCCGCCTCACATCGCGCACGACGGCATCGCGCTCGGCGAGTGCATGACGTGCTCGA
TCGGCTTCAGAGCCCCGTCCGCAGGCGAATTGCGCGCGCAGTTCCTCTATCACCTGGCGGAGCGCGGCGGCCTGCGTACC
GGCGCGCGCGAGAACGCGCGATACCGCGACCCGGCGCAGCCCGCGGTCGACTCGCCCGCGATGCTGCCCGCCGCGATGGT
CAAGCGCGTGGCCGCGACGCTCGCCGGCATCCAATGGGACGAACACGATGTCGGGGATTTTCTCGGCTGTTATTTGAGCG
AGCCCAAATCGAACGTCGTTTTCGAGCCGCCGACGCGGCGGCTCGGCGAAGCCGCATTTGTCACCCAGGCGTCGCGCCGA
GGCGTGCGGCTCGACAGGAAAGCGGCGTTGTTGTATAACGCGCGCTCGTACTTCATCAACGGCGACGCGCATCCGCTCGC
AACCGCGGCGAAATGGCTGCCGGAGCTGGCCGATACGCGCCGGATGGAGGCGAAACGGTTTGTAACACTCTCCCGGGACC
CCGCCATGACAGGCCTGCTGCACGAATGGTATTGTGCGGGCTGGATACGGGTGGGCGACATGGGGTAG

Upstream 100 bases:

>100_bases
ACCGATACGACAGTGTTTTTTGCAATTTTCATCCAATTCTCCCAAGTACAACAGCCATTATACGATGCCCAAACGGCCAC
TACCCGAACCGTCCGGCCGT

Downstream 100 bases:

>100_bases
AGTTGCCCGTCCGTACACCCATATGAACGCACGTTTTGTATGGGAAAGACAACGTATTGACCCCGCATTTGTCGACGGTC
GATAGGAAAGTGCATATAAT

Product: cupin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAITGIAPPLSRDALFELAADYDVESRLVTHFRNRWQLEHGP
FEPEYLPSVKRREWTLLVQGLDLHDDRARALLERFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIG
AQQDLSLQEGLPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGIALGECMTCSIGFRAPSAGELRAQFLYHLAERGGLRT
GARENARYRDPAQPAVDSPAMLPAAMVKRVAATLAGIQWDEHDVGDFLGCYLSEPKSNVVFEPPTRRLGEAAFVTQASRR
GVRLDRKAALLYNARSYFINGDAHPLATAAKWLPELADTRRMEAKRFVTLSRDPAMTGLLHEWYCAGWIRVGDMG

Sequences:

>Translated_395_residues
MRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAITGIAPPLSRDALFELAADYDVESRLVTHFRNRWQLEHGP
FEPEYLPSVKRREWTLLVQGLDLHDDRARALLERFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIG
AQQDLSLQEGLPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGIALGECMTCSIGFRAPSAGELRAQFLYHLAERGGLRT
GARENARYRDPAQPAVDSPAMLPAAMVKRVAATLAGIQWDEHDVGDFLGCYLSEPKSNVVFEPPTRRLGEAAFVTQASRR
GVRLDRKAALLYNARSYFINGDAHPLATAAKWLPELADTRRMEAKRFVTLSRDPAMTGLLHEWYCAGWIRVGDMG
>Mature_395_residues
MRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAITGIAPPLSRDALFELAADYDVESRLVTHFRNRWQLEHGP
FEPEYLPSVKRREWTLLVQGLDLHDDRARALLERFRFVPDARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIG
AQQDLSLQEGLPLKILANFEPTDEWVLEPGDMLYLPPHIAHDGIALGECMTCSIGFRAPSAGELRAQFLYHLAERGGLRT
GARENARYRDPAQPAVDSPAMLPAAMVKRVAATLAGIQWDEHDVGDFLGCYLSEPKSNVVFEPPTRRLGEAAFVTQASRR
GVRLDRKAALLYNARSYFINGDAHPLATAAKWLPELADTRRMEAKRFVTLSRDPAMTGLLHEWYCAGWIRVGDMG

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=374, Percent_Identity=34.4919786096257, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 44624; Mature: 44624

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAITGIAPPLSRDALFELAADY
CCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
DVESRLVTHFRNRWQLEHGPFEPEYLPSVKRREWTLLVQGLDLHDDRARALLERFRFVPD
CHHHHHHHHHHHHEECCCCCCCCHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC
ARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIGAQQDLSLQEGLPLKILANFE
CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCHHCCCCEEEEECCC
PTDEWVLEPGDMLYLPPHIAHDGIALGECMTCSIGFRAPSAGELRAQFLYHLAERGGLRT
CCCCCEECCCCEEEECCCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
GARENARYRDPAQPAVDSPAMLPAAMVKRVAATLAGIQWDEHDVGDFLGCYLSEPKSNVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCE
FEPPTRRLGEAAFVTQASRRGVRLDRKAALLYNARSYFINGDAHPLATAAKWLPELADTR
ECCCHHHHCCHHHHHHHHHCCCCCCHHHHEEEECCEEEECCCCCHHHHHHHHHHHHHHHH
RMEAKRFVTLSRDPAMTGLLHEWYCAGWIRVGDMG
HHHHHHEEEECCCCHHHHHHHHHHHHCEEEECCCC
>Mature Secondary Structure
MRERTRAPLSEAPTPLLGNLSPAQFMRRYWQKKPLLIRQAITGIAPPLSRDALFELAADY
CCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC
DVESRLVTHFRNRWQLEHGPFEPEYLPSVKRREWTLLVQGLDLHDDRARALLERFRFVPD
CHHHHHHHHHHHHEECCCCCCCCHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC
ARLDDLMISYATDGGGVGPHFDSYDVFLLQVHGKRRWRIGAQQDLSLQEGLPLKILANFE
CCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCHHCCCCEEEEECCC
PTDEWVLEPGDMLYLPPHIAHDGIALGECMTCSIGFRAPSAGELRAQFLYHLAERGGLRT
CCCCCEECCCCEEEECCCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
GARENARYRDPAQPAVDSPAMLPAAMVKRVAATLAGIQWDEHDVGDFLGCYLSEPKSNVV
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCE
FEPPTRRLGEAAFVTQASRRGVRLDRKAALLYNARSYFINGDAHPLATAAKWLPELADTR
ECCCHHHHCCHHHHHHHHHCCCCCCHHHHEEEECCEEEECCCCCHHHHHHHHHHHHHHHH
RMEAKRFVTLSRDPAMTGLLHEWYCAGWIRVGDMG
HHHHHHEEEECCCCHHHHHHHHHHHHCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]