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The map label for this gene is hofB [C]

Identifier: 126455026

GI number: 126455026

Start: 1752308

End: 1753651

Strand: Direct

Name: hofB [C]

Synonym: BURPS1106A_1791

Alternate gene names: 126455026

Gene position: 1752308-1753651 (Clockwise)

Preceding gene: 126453930

Following gene: 126453046

Centisome position: 43.93

GC content: 67.63

Gene sequence:

>1344_bases
ATGGCACACGACATTCAATTTGCCGACGGGGCGACGCCGTTCTCGCAAACGCAGCAGTTTCACGACATCAAGAACGCGGC
GCACGAGCATCTCCTCACGCGCATCGAGGAGCTGGGCGCGGAGTTCGGGCGCTGGTCGCGGCAGGCGATCAATCAGTTCG
TCGATCTCGAGATCGACAGCTTCGTGCGGCTGCGCCGCATTCCGCTCAACGAGAACGAAGTGCGCGCGATCGCCGAGGCG
CTGACCAAGGAGCTCGCGGGCTTCGGGCCGATCGAGGACCTGCTCGCGGATCCGCACGTCGAGGACATCCTGATCAACGG
CTACAGCGACGTCTACGTGTCGAAGCACGGCATCCTCACGAAGCTGCCCGTGCGCTTCACCGACAACGCGCACCTGCTGC
GGATCGTGCGGCGCATTCTCGCGCCGATCGGCCGCCGGCTCGACGAGTCCAATCCGATGGTCGACGCGCGGCTGCCGGAC
GGCGGGCGCGTGAACGTCGTGATCGAGCCGCTGTCGATCGACGGCCCGGTCGTGTCGATCCGCAAGTTCCGCAAGGATCC
GTTAAAGCCCGCCGATCTGCTCGCGAACGGCACCTTCAACGACGAGATCGGCGCGCTGCTCGAGGCCGCGGTCGTCGCGC
GCTGCAACATCCTCGTGTCGGGCGGCACGAGCTCCGGCAAGACCTCGCTCCTGAACGCGCTCGCGTTCCACATTCCGGGC
ATCGAGCGCGTCGTGACGATCGAGGACACGGCCGAGCTCTCGCTCAACCACCCGCACGTCGTGCGGCTCGAGAGCCGCCC
CGGCGGCTTCGACGGCACGGGCGTCGTGTCGATCCGCGATCTGCTGCGCAACACGCTGCGGATGCGCCCGGACCGGATCA
TCGTCGGCGAAGTGCGCGGCGGCGAAGTGCTCGAGATGATGCAGGCGATGAACACCGGCCACGACGGCTCGATGGGCACG
ATCCACGCGAGCTCGCCGCGCGAGTGCCTGTACCGCCTCGAGATGCTCGCCGGCTTCGCGGGCTTCCAGGGCACCGAATC
GAGCCTGCGCCGGCAGATCGCGAACGCGGTCGATTTCATCGTCCAGATCGGGCGGCTGTCGAACGGGCGGCGGCGCATCC
TGTCGGTCACCGAGGTGACGGGGCTGTCCGACAACATCATCGCGACGCAGGAACTCTACCGCTACGAGCCGCGCGTGAAC
GCGGACGGCGACGAGATCGACGCGTGGGAATCGCTCGGCATCCATCCGCATTCGCCGAAGCTCGCGCGCTTCAGGCAGGC
ACTGTCGGGCGGCGGCTTCGGCGGCGGCGAGCCGTACGGGCGCGGCGGAGGCTTCAATGTCTAG

Upstream 100 bases:

>100_bases
ACGCGCGACGGGCGGCGCGGGAGCCGCCGCGCCGCGCCCGGCGGGCGGTCTTTCCGCGCTCAGGCGCTTCATTCAACCCA
CCTCCAAGCGGTCGTAAGAG

Downstream 100 bases:

>100_bases
CGCGGCGCTCTGGGCGCTCGCGCTCGCGCTGCTGTGCGTCGCCGGGGCGTTCGCGCTATGGCGGCGCGGCGAGGCGAACA
GGGAGCGCGCGCATGCGGCG

Product: type II/IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAIAEA
LTKELAGFGPIEDLLADPHVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPD
GGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNDEIGALLEAAVVARCNILVSGGTSSGKTSLLNALAFHIPG
IERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGT
IHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVN
ADGDEIDAWESLGIHPHSPKLARFRQALSGGGFGGGEPYGRGGGFNV

Sequences:

>Translated_447_residues
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAIAEA
LTKELAGFGPIEDLLADPHVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPD
GGRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNDEIGALLEAAVVARCNILVSGGTSSGKTSLLNALAFHIPG
IERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGT
IHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVN
ADGDEIDAWESLGIHPHSPKLARFRQALSGGGFGGGEPYGRGGGFNV
>Mature_446_residues
AHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDSFVRLRRIPLNENEVRAIAEAL
TKELAGFGPIEDLLADPHVEDILINGYSDVYVSKHGILTKLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDG
GRVNVVIEPLSIDGPVVSIRKFRKDPLKPADLLANGTFNDEIGALLEAAVVARCNILVSGGTSSGKTSLLNALAFHIPGI
ERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRGGEVLEMMQAMNTGHDGSMGTI
HASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAVDFIVQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNA
DGDEIDAWESLGIHPHSPKLARFRQALSGGGFGGGEPYGRGGGFNV

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 49030; Mature: 48899

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS00387 PPASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FVRLRRIPLNENEVRAIAEALTKELAGFGPIEDLLADPHVEDILINGYSDVYVSKHGILT
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEECCCCEEEEECCCCEE
KLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSI
ECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHH
RKFRKDPLKPADLLANGTFNDEIGALLEAAVVARCNILVSGGTSSGKTSLLNALAFHIPG
HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCC
IERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRG
CCEEEEEECCCCEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
GEVLEMMQAMNTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAVDFI
CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNADGDEIDAWESLGIHPHSPK
HHHHHCCCCCHHEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCH
LARFRQALSGGGFGGGEPYGRGGGFNV
HHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AHDIQFADGATPFSQTQQFHDIKNAAHEHLLTRIEELGAEFGRWSRQAINQFVDLEIDS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
FVRLRRIPLNENEVRAIAEALTKELAGFGPIEDLLADPHVEDILINGYSDVYVSKHGILT
HHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEECCCCEEEEECCCCEE
KLPVRFTDNAHLLRIVRRILAPIGRRLDESNPMVDARLPDGGRVNVVIEPLSIDGPVVSI
ECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHH
RKFRKDPLKPADLLANGTFNDEIGALLEAAVVARCNILVSGGTSSGKTSLLNALAFHIPG
HHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCC
IERVVTIEDTAELSLNHPHVVRLESRPGGFDGTGVVSIRDLLRNTLRMRPDRIIVGEVRG
CCEEEEEECCCCEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
GEVLEMMQAMNTGHDGSMGTIHASSPRECLYRLEMLAGFAGFQGTESSLRRQIANAVDFI
CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
VQIGRLSNGRRRILSVTEVTGLSDNIIATQELYRYEPRVNADGDEIDAWESLGIHPHSPK
HHHHHCCCCCHHEEEEHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCH
LARFRQALSGGGFGGGEPYGRGGGFNV
HHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]