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The map label for this gene is sodC [H]

Identifier: 126454894

GI number: 126454894

Start: 1040597

End: 1041136

Strand: Direct

Name: sodC [H]

Synonym: BURPS1106A_1062

Alternate gene names: 126454894

Gene position: 1040597-1041136 (Clockwise)

Preceding gene: 126452577

Following gene: 126451751

Centisome position: 26.09

GC content: 73.89

Gene sequence:

>540_bases
ATGAAACGACGACTCGACGGCGTGCCGGGGTGGCTCGCGCTCAATGCGCCGCTTGTCCTGGCCGCCATCGGCCTGTTGGC
CGGCTGCACCACCTTTGCCTCGCAACACGAAAAACGCGCCGACGCGCTGCTGCAGCCGACCGTCGGCAGCCAGGCGCGCG
GCACGGTGACGCTCGCCGAACGCCCGGACGGCGTGCAGGTCACGTACAACTTCGCGGGCCTGCCGCCCAACAGCGACCAC
GCGTTGCAGGTTCACGAGCGCGGCGATTGCAACGCCGCCGACGGCTCGAGCGCGGGCGCGGTATTCGCGCCCGCGGCCGA
CCGGCTGCGCGCGGGCGCGCGCGTCGGCGGCGACCTCGGCAACATCCACGCGGATGCGAACGGCGTCGCGGCGGGTTTCA
TCACCGCGCCGGACCTCGCGCTCGACGGCGTGCGCTCGGTGCTCGGCCGCTCGGTGCTCGTCCATCGCGACCCGGCAGAC
CCGGCGTTCCCGCAGCACGGCGCGGGGCCCGCGCTTGCGTGCGGCGTCGTGCGGCAATGA

Upstream 100 bases:

>100_bases
GCGGCGCCGCGAGTCACGGTATCATGACGACTTTCCCGAAGGTCCCCTTTACCGGCCCGGCGGGCGCTCGCCAGAGCGTT
TCGCCCGGCATGAGGATCGC

Downstream 100 bases:

>100_bases
CGCGAGTCGGTGCGTTCATGATCGCGTAAAATGTGCGCCTTTCGTGGCCGCCGGACCGTTCGGCGGCTTCCTTCCCGATA
GCAGCGTTTTCCGGCGCCTT

Product: copper/zinc superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKRRLDGVPGWLALNAPLVLAAIGLLAGCTTFASQHEKRADALLQPTVGSQARGTVTLAERPDGVQVTYNFAGLPPNSDH
ALQVHERGDCNAADGSSAGAVFAPAADRLRAGARVGGDLGNIHADANGVAAGFITAPDLALDGVRSVLGRSVLVHRDPAD
PAFPQHGAGPALACGVVRQ

Sequences:

>Translated_179_residues
MKRRLDGVPGWLALNAPLVLAAIGLLAGCTTFASQHEKRADALLQPTVGSQARGTVTLAERPDGVQVTYNFAGLPPNSDH
ALQVHERGDCNAADGSSAGAVFAPAADRLRAGARVGGDLGNIHADANGVAAGFITAPDLALDGVRSVLGRSVLVHRDPAD
PAFPQHGAGPALACGVVRQ
>Mature_179_residues
MKRRLDGVPGWLALNAPLVLAAIGLLAGCTTFASQHEKRADALLQPTVGSQARGTVTLAERPDGVQVTYNFAGLPPNSDH
ALQVHERGDCNAADGSSAGAVFAPAADRLRAGARVGGDLGNIHADANGVAAGFITAPDLALDGVRSVLGRSVLVHRDPAD
PAFPQHGAGPALACGVVRQ

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322564, Length=150, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18207; Mature: 18207

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRLDGVPGWLALNAPLVLAAIGLLAGCTTFASQHEKRADALLQPTVGSQARGTVTLAE
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
RPDGVQVTYNFAGLPPNSDHALQVHERGDCNAADGSSAGAVFAPAADRLRAGARVGGDLG
CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCC
NIHADANGVAAGFITAPDLALDGVRSVLGRSVLVHRDPADPAFPQHGAGPALACGVVRQ
CEECCCCCEEEEEEECCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MKRRLDGVPGWLALNAPLVLAAIGLLAGCTTFASQHEKRADALLQPTVGSQARGTVTLAE
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
RPDGVQVTYNFAGLPPNSDHALQVHERGDCNAADGSSAGAVFAPAADRLRAGARVGGDLG
CCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCC
NIHADANGVAAGFITAPDLALDGVRSVLGRSVLVHRDPADPAFPQHGAGPALACGVVRQ
CEECCCCCEEEEEEECCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]