| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is yxxF [H]
Identifier: 126454784
GI number: 126454784
Start: 332153
End: 333184
Strand: Direct
Name: yxxF [H]
Synonym: BURPS1106A_0361
Alternate gene names: 126454784
Gene position: 332153-333184 (Clockwise)
Preceding gene: 126452596
Following gene: 126452948
Centisome position: 8.33
GC content: 67.15
Gene sequence:
>1032_bases TTGCATGGCGACCTTCTTTTCAAAGGAGGAAAGGCGTTTTGTACTGAGTTTAGCGATGGAGATGCGCGAATCAAGTGCCT AGAATCGAAGCCAGGCTTTCTTCTTGCGAGAACTCACATGGCTTCGAACCCGGCTTCGTCCGACGCGCGCCGCGGGGCGC TCGAAATGGTGGTCGCGATGCTGATGTCCGGCACGATCGGCTGGCTCGTCGTGTCGTCCCGACAGCATTTGATGAATGTC GTGTTTTTCCGCTGCCTGTTCGGCGGCGCGACGATGCTGATCATTTGCGCCGCGCTCGGCCTGCTGCGCCGCGATCTGCT GACGAAACGCACGATCGCGTTCGCGCTGCTCGGCAGCGTCGCGATCGTCGCGAACTGGGTGCTGCTGTTTGCCGCGTATT CGCGTGCGTCGATCTCGATGGCGACGGCCGTGTACAACACGCAGCCGTTCATGCTCGTCGCGCTCGGCGCGCTCGTGTTC CGCGAGCGGCTCACCGCGTCGGCCGCCGCGTGGCTCGTGCTCGCGTTCGGCGGGCTCGCGCTCGTCGTGCGCGTCGAGCC GGCGGTGCTTGCGGTGCCCGGCGAGTATCTCGAGGGCGTCGCCCTCGCGCTCGGCGCGGCGTTCCTGTATGCGGTGTCGT CGATCGTCACGAAGCGCTTGAAGGGCACGCCGCCGCACCTCATCGCGCTGTTCCAGACGGGCGTCGGCGTGCTCGCGCTC GCGCCGTTCGTGCATTACGACGCGCTGCCCGCGACGGCGGGGCAGTGGCTCGATCTCGTCGCGCTCGGCGTCGTCAACAC GGGGATCATGTACGTGCTGCTGTACGGCGCGATCCAGAAGCTGCCGACCGCGACGATCGGGGCGCTGTCGTTCGTCTATC CGGTCGTCGCGATCGTCGTCGACCGGTTCGCGTTCGGGCAGACGCTCGCATGGAGCCAGGTGGGCGGCGCGGCGCTGATC CTGCTCGCGGCGGCGGGCGTGAATCTCGGGTGGCGGATCGTGCCGGCGCGACGTGTCGCGGCGCGCGGCTGA
Upstream 100 bases:
>100_bases CGCTGACGGGCTGGCGCGCGTCGTCGGCGAGCGTGCGCAGCAGCTCGCGGTCGATCGCATCGAGCGGGTTCGCCGCGGCA AGCGGCGTGGAAAGGCGTTT
Downstream 100 bases:
>100_bases AGGCGGCGCACGGGTGCGAGCGCGCAAGCGGGCGCAAGGCAGCCGCGGGAGCGAGCACAAAGGCGAGCGCAGGAGAGAGC GCAAGGGAGCGCGCGCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MHGDLLFKGGKAFCTEFSDGDARIKCLESKPGFLLARTHMASNPASSDARRGALEMVVAMLMSGTIGWLVVSSRQHLMNV VFFRCLFGGATMLIICAALGLLRRDLLTKRTIAFALLGSVAIVANWVLLFAAYSRASISMATAVYNTQPFMLVALGALVF RERLTASAAAWLVLAFGGLALVVRVEPAVLAVPGEYLEGVALALGAAFLYAVSSIVTKRLKGTPPHLIALFQTGVGVLAL APFVHYDALPATAGQWLDLVALGVVNTGIMYVLLYGAIQKLPTATIGALSFVYPVVAIVVDRFAFGQTLAWSQVGGAALI LLAAAGVNLGWRIVPARRVAARG
Sequences:
>Translated_343_residues MHGDLLFKGGKAFCTEFSDGDARIKCLESKPGFLLARTHMASNPASSDARRGALEMVVAMLMSGTIGWLVVSSRQHLMNV VFFRCLFGGATMLIICAALGLLRRDLLTKRTIAFALLGSVAIVANWVLLFAAYSRASISMATAVYNTQPFMLVALGALVF RERLTASAAAWLVLAFGGLALVVRVEPAVLAVPGEYLEGVALALGAAFLYAVSSIVTKRLKGTPPHLIALFQTGVGVLAL APFVHYDALPATAGQWLDLVALGVVNTGIMYVLLYGAIQKLPTATIGALSFVYPVVAIVVDRFAFGQTLAWSQVGGAALI LLAAAGVNLGWRIVPARRVAARG >Mature_343_residues MHGDLLFKGGKAFCTEFSDGDARIKCLESKPGFLLARTHMASNPASSDARRGALEMVVAMLMSGTIGWLVVSSRQHLMNV VFFRCLFGGATMLIICAALGLLRRDLLTKRTIAFALLGSVAIVANWVLLFAAYSRASISMATAVYNTQPFMLVALGALVF RERLTASAAAWLVLAFGGLALVVRVEPAVLAVPGEYLEGVALALGAAFLYAVSSIVTKRLKGTPPHLIALFQTGVGVLAL APFVHYDALPATAGQWLDLVALGVVNTGIMYVLLYGAIQKLPTATIGALSFVYPVVAIVVDRFAFGQTLAWSQVGGAALI LLAAAGVNLGWRIVPARRVAARG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 36207; Mature: 36207
Theoretical pI: Translated: 10.32; Mature: 10.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHGDLLFKGGKAFCTEFSDGDARIKCLESKPGFLLARTHMASNPASSDARRGALEMVVAM CCCCEEEECCHHEEEECCCCCCEEEEECCCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHH LMSGTIGWLVVSSRQHLMNVVFFRCLFGGATMLIICAALGLLRRDLLTKRTIAFALLGSV HHCCCHHEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIVANWVLLFAAYSRASISMATAVYNTQPFMLVALGALVFRERLTASAAAWLVLAFGGLA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE LVVRVEPAVLAVPGEYLEGVALALGAAFLYAVSSIVTKRLKGTPPHLIALFQTGVGVLAL EEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHH APFVHYDALPATAGQWLDLVALGVVNTGIMYVLLYGAIQKLPTATIGALSFVYPVVAIVV HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH DRFAFGQTLAWSQVGGAALILLAAAGVNLGWRIVPARRVAARG HHHHCCCCHHHHHCCHHHHHHHHHCCCCCCEEEECHHHHHCCC >Mature Secondary Structure MHGDLLFKGGKAFCTEFSDGDARIKCLESKPGFLLARTHMASNPASSDARRGALEMVVAM CCCCEEEECCHHEEEECCCCCCEEEEECCCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHH LMSGTIGWLVVSSRQHLMNVVFFRCLFGGATMLIICAALGLLRRDLLTKRTIAFALLGSV HHCCCHHEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIVANWVLLFAAYSRASISMATAVYNTQPFMLVALGALVFRERLTASAAAWLVLAFGGLA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE LVVRVEPAVLAVPGEYLEGVALALGAAFLYAVSSIVTKRLKGTPPHLIALFQTGVGVLAL EEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHH APFVHYDALPATAGQWLDLVALGVVNTGIMYVLLYGAIQKLPTATIGALSFVYPVVAIVV HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH DRFAFGQTLAWSQVGGAALILLAAAGVNLGWRIVPARRVAARG HHHHCCCCHHHHHCCHHHHHHHHHCCCCCCEEEECHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7704263; 9384377; 8316082 [H]