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The map label for this gene is intB [H]

Identifier: 126454628

GI number: 126454628

Start: 3618449

End: 3618799

Strand: Reverse

Name: intB [H]

Synonym: BURPS1106A_3699

Alternate gene names: 126454628

Gene position: 3618799-3618449 (Counterclockwise)

Preceding gene: 126454671

Following gene: 126455261

Centisome position: 90.73

GC content: 57.55

Gene sequence:

>351_bases
TTGCGAGAGCTTCACGCACTGACCGGTCACGGTCGTTACGTGTTTCCGGGAGCGCGGTCGGCGCAGCGCCCGATGAGCGA
TGCTGCGGTCAATGCGGCTCTGCGTCGTTTGGGCTACGACACGCGGACCGAAATCACAGGCCACGGCTTTCGGGCGATGG
CACGCACCATTCTTCATGAAGAGTTGGAGCAAAAGCCTGAAGTGATCGAGCATCAGCTTGCTCACGCCGTGCCCGATACG
CTCGGCAAGGCGTACAACCGCACGAAATTCCTCAAAGAGCGGAAGGCGATGATGCAAAAGTGGGCCGACTACTTGGAAAA
ACTCAAGGCTAAGGTTGATCTGAAATCGTGA

Upstream 100 bases:

>100_bases
TGAACACGATATCTCTAACGCACCGCTCGCAACGCCCGTTTACACCGTATCCAATTTCAACAGCCTGCTAGTTCCGCTCG
CTACGCAAGCTATTCAGATC

Downstream 100 bases:

>100_bases
ACGAACGAAACAACAACTTCCGATCCCAGCTAGGCATCATGGCCCGCTGCTTAGAGCTTGCTCGTCGCCTCTCGAAACGG
TACGTGATGCTCAATCCCGA

Product: phage integrase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MRELHALTGHGRYVFPGARSAQRPMSDAAVNAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHAVPDT
LGKAYNRTKFLKERKAMMQKWADYLEKLKAKVDLKS

Sequences:

>Translated_116_residues
MRELHALTGHGRYVFPGARSAQRPMSDAAVNAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHAVPDT
LGKAYNRTKFLKERKAMMQKWADYLEKLKAKVDLKS
>Mature_116_residues
MRELHALTGHGRYVFPGARSAQRPMSDAAVNAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHAVPDT
LGKAYNRTKFLKERKAMMQKWADYLEKLKAKVDLKS

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=103, Percent_Identity=41.747572815534, Blast_Score=80, Evalue=5e-17,
Organism=Escherichia coli, GI1788974, Length=103, Percent_Identity=38.8349514563107, Blast_Score=78, Evalue=2e-16,
Organism=Escherichia coli, GI1788690, Length=95, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 13272; Mature: 13272

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRELHALTGHGRYVFPGARSAQRPMSDAAVNAALRRLGYDTRTEITGHGFRAMARTILHE
CCCCCCCCCCCCEECCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
ELEQKPEVIEHQLAHAVPDTLGKAYNRTKFLKERKAMMQKWADYLEKLKAKVDLKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRELHALTGHGRYVFPGARSAQRPMSDAAVNAALRRLGYDTRTEITGHGFRAMARTILHE
CCCCCCCCCCCCEECCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
ELEQKPEVIEHQLAHAVPDTLGKAYNRTKFLKERKAMMQKWADYLEKLKAKVDLKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]