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The map label for this gene is rimM [H]

Identifier: 126454495

GI number: 126454495

Start: 2862816

End: 2863505

Strand: Reverse

Name: rimM [H]

Synonym: BURPS1106A_2918

Alternate gene names: 126454495

Gene position: 2863505-2862816 (Counterclockwise)

Preceding gene: 126451631

Following gene: 126453913

Centisome position: 71.79

GC content: 68.55

Gene sequence:

>690_bases
ATGGCGGGTCACGATTCCGGTAATGCAAAGCGCGGGCGGTCGCCGTCGTTCGGCGTGTTCGTCCGCAAGCCGGTCGAGCG
CGCGCCCGCGAAAGGGGCGAGCGACGGCGCGGTTGATTCGCAAGCAATTCGCATCGATGCAGCGCAGTCGTGGCCGGACG
ATGCGGTTGAGGTCGGCGCGGTGGTCGATGCGTACGGCCTGAAGGGCTGGGTCAAGCTCGCGGCCCACGCCGGTGCGGGG
CGAGGCGGCGATGCGCTGCTCAAGGCCCGCGACTGGTGGCTGCAAAAGGGCGCGGAGCGGAAGTTCGCGCGCGTCACGCA
GGCGAAGCTGCACGGCGACACGGTCGTCGCACATCCGGGCGGCTCGGTCGATCGCGATACGGCGCTCGCGCTGCGCGGCG
CTCGCGTGTTCGTGCGCCGCGGCGATTTCCCGGCGCTCGCCGCCGACGAATTCTACTGGGTCGATCTGATCGGCCTCGAT
GTCGTCAACGAGGCGGGTGTCGCGCTCGGCAAGATCGCCGACATGATCGACAACGGCGTGCATTCGATCATGCGCGTCGA
ATATCCGGCGACGGGCAAGGATGGTCGGCCGAAAACCGGCGAGCGGCTGATTCCGTTCGTCGGCGTGTACGTGAAGGCGG
TCGAGCAGGCGGCGGGGCGCGTCGTCGTCGACTGGGAAGCCGATTACTGA

Upstream 100 bases:

>100_bases
CGCCGACCGTCGAGCGTCTCGTGAAGCAGGCGCAAAAGGCGCAGCCGGCTGCCTAAAGCATGGCGCGGCGTGCCGGAAGG
GCCGGCTGCGAGGTTCGGTG

Downstream 100 bases:

>100_bases
AATGGACGAAGCCACGCAGAGCGCGATCCAGTTCGACGTCGTCACACTCTTTCCGGAGATGTTTCGCGCGTTGACCGACT
GGGGCATCACGAGCCGCGCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MAGHDSGNAKRGRSPSFGVFVRKPVERAPAKGASDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAGAG
RGGDALLKARDWWLQKGAERKFARVTQAKLHGDTVVAHPGGSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLD
VVNEAGVALGKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY

Sequences:

>Translated_229_residues
MAGHDSGNAKRGRSPSFGVFVRKPVERAPAKGASDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAGAG
RGGDALLKARDWWLQKGAERKFARVTQAKLHGDTVVAHPGGSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLD
VVNEAGVALGKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY
>Mature_228_residues
AGHDSGNAKRGRSPSFGVFVRKPVERAPAKGASDGAVDSQAIRIDAAQSWPDDAVEVGAVVDAYGLKGWVKLAAHAGAGR
GGDALLKARDWWLQKGAERKFARVTQAKLHGDTVVAHPGGSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLDV
VNEAGVALGKIADMIDNGVHSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=176, Percent_Identity=27.8409090909091, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 24372; Mature: 24241

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHDSGNAKRGRSPSFGVFVRKPVERAPAKGASDGAVDSQAIRIDAAQSWPDDAVEVGA
CCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
VVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLHGDTVVAHPG
HHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCC
GSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLDVVNEAGVALGKIADMIDNGV
CCCCCCHHHHEECCEEEEEECCCCCCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHH
HSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY
HHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCC
>Mature Secondary Structure 
AGHDSGNAKRGRSPSFGVFVRKPVERAPAKGASDGAVDSQAIRIDAAQSWPDDAVEVGA
CCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
VVDAYGLKGWVKLAAHAGAGRGGDALLKARDWWLQKGAERKFARVTQAKLHGDTVVAHPG
HHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEECCC
GSVDRDTALALRGARVFVRRGDFPALAADEFYWVDLIGLDVVNEAGVALGKIADMIDNGV
CCCCCCHHHHEECCEEEEEECCCCCCCCCCEEEEEEECHHHHHHCCHHHHHHHHHHHHHH
HSIMRVEYPATGKDGRPKTGERLIPFVGVYVKAVEQAAGRVVVDWEADY
HHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA