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The map label for this gene is rarA [H]

Identifier: 126454407

GI number: 126454407

Start: 2969678

End: 2970988

Strand: Reverse

Name: rarA [H]

Synonym: BURPS1106A_3040

Alternate gene names: 126454407

Gene position: 2970988-2969678 (Counterclockwise)

Preceding gene: 126452390

Following gene: 126454758

Centisome position: 74.49

GC content: 68.8

Gene sequence:

>1311_bases
ATGTCCGACCTGTTTGCAGTCGAACCGCGCCGGCCGCTCGCCGAGGCGCTGCGCCCGAAGACGCTCGCCGACGTGATCGG
GCAGACGCATCTTCTCGGCGAAGGCAAGCCGCTCAGGCTCGCGTTCGAATCGGGCAAGCCGCATTCGATGATCCTCTGGG
GGCCGCCCGGCGTCGGCAAGACGACGCTCGCGCGCCTGACCGCGCTCGCGTTCGATTGCGAGTTCATCGCGCTCTCGGCG
GTGCTGGGCGGCGTGAAGGACATCCGCGAGGCGATGGAGCAGGCGCGCGACACGCTGAACCGCACCGGCCGCCACACGAT
CCTGTTCGTCGACGAAATCCATCGCTTCAACAAGGCGCAGCAGGACGCGCTGCTGCCGTTCGTCGAATCGGGGCTCGTCA
CGTTCATCGGCGCGACGACCGAGAACCCGAGCTTCGAGGTGAATTCGGCGCTGCTGTCGCGCGCGCAGGTGTACGTGCTG
AAGTCGCTCGCGGAAGACGAGCTGCGCCAGTTGCTCAAGCGCGCGCAGGACGTGGCGCTCGGCGGGCTCGCGTTCGACGA
CAAGGCGGTCGACACGCTCGTCGGCTACGCGGACGGCGACGCGCGGCGCTTCCTGAACCTGCTCGAGCAGGCGCAGACGG
CGGCTTCGTCCGCGGGCGTGACGACGATCGACGCGGCGTTCGTCGAGAGCGCGATGACGATGAACGCGCGCCGCTTCGAC
AAGGGCGGCGACAACTTCTACGACCAGATCTCCGCGCTGCACAAGTCGGTGCGCGGCTCGAGCCCGGACGGCGCGCTGTA
CTGGCTGTGCCGGATGCTCGACGGCGGCGCGGACCCGAAATACCTCGCGCGGCGCGTCGTGCGTATGGCGTGGGAAGACA
TCGGCCTGGCCGATCCGCGCGCGATGCAGATCGCGAACGATGCGGCGCAGACCTACGAACGGCTCGGCTCGCCGGAGGGC
GAGCTCGCGCTCGCGCAGGCGGTGCTCTATCTCGCGTGCGCGGCGAAGAGCAACGCCGGCTACAACGCGTACAACGAGGC
GATGGCGTTCGTGCGGCAGGACAAGTCGCGCGAGGTGCCGGTGCATTTGCGCAACGCGCCGACGAAGCTGATGAAGGAGC
TCGGCTACGGCCACGCGTACCGTTACGCGCACGACGAGCCGAACGCCTATGCGGCGGGCGAGACGTACTTGCCGGACGGC
ATGCGCGAGCCGCGCTGGTACAAGCCGGTGCCGCGCGGGCTCGAGACGAAGATCGCCGACAAGCTTGCATGGCTGCGCGA
GCTCGACCGCGACGCGGGCAAGAACGACTAG

Upstream 100 bases:

>100_bases
CCGCGCGGGGCGCGGCGTGGCATCGGGCGGCGCGGCTGTCATAATGTCCGGTCCGGCGGCGAATGCGCGCCGCCACCGTT
TTTCGTGGGAGCCAAGGTCC

Downstream 100 bases:

>100_bases
CGGCGCCGACGCGGGTGGCGGCCGTCGCCGTCCGTCGGTTCAGCGCTTGCGCACCGGCGTCTTCTTCCAGTAGCCGAACG
GCGCCTGATGGCAGTCGATG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEG
ELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPRWYKPVPRGLETKIADKLAWLRELDRDAGKND

Sequences:

>Translated_436_residues
MSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEG
ELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPRWYKPVPRGLETKIADKLAWLRELDRDAGKND
>Mature_435_residues
SDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAV
LGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
SLAEDELRQLLKRAQDVALGGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFDK
GGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPRAMQIANDAAQTYERLGSPEGE
LALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGM
REPRWYKPVPRGLETKIADKLAWLRELDRDAGKND

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=43.6651583710407, Blast_Score=326, Evalue=3e-89,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=39.8190045248869, Blast_Score=274, Evalue=1e-73,
Organism=Escherichia coli, GI1787119, Length=442, Percent_Identity=54.0723981900452, Blast_Score=457, Evalue=1e-130,
Organism=Escherichia coli, GI1786676, Length=267, Percent_Identity=30.3370786516854, Blast_Score=79, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6324111, Length=430, Percent_Identity=41.1627906976744, Blast_Score=293, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47963; Mature: 47832

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHHCCHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCHHH
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLAEDELRQLLKRAQDVAL
HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPRWYKPVPRGLETKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDRDAGKND
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLFAVEPRRPLAEALRPKTLADVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCHHHHHHCCHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIREAMEQARDTLNRTGRHTILFVDEIHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCHHH
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLAEDELRQLLKRAQDVAL
HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLAFDDKAVDTLVGYADGDARRFLNLLEQAQTAASSAGVTTIDAAFVESAMTMNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWLCRMLDGGADPKYLARRVVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
AMQIANDAAQTYERLGSPEGELALAQAVLYLACAAKSNAGYNAYNEAMAFVRQDKSREVP
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPRWYKPVPRGLETKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDRDAGKND
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]