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The map label for this gene is yhbY [H]

Identifier: 126454361

GI number: 126454361

Start: 1466460

End: 1467014

Strand: Reverse

Name: yhbY [H]

Synonym: BURPS1106A_1510

Alternate gene names: 126454361

Gene position: 1467014-1466460 (Counterclockwise)

Preceding gene: 126454978

Following gene: 126452963

Centisome position: 36.78

GC content: 71.71

Gene sequence:

>555_bases
ATGCCCGCCCTTTCGCTTTCCCCCGCCGAGCGCTCCGCGCTGCGTTCCGAAGCCCATGCGCTCAAGCCCGTCGTGCTGAT
CGGCGCCGAAGGGCTGACCGACGCCGTGCTCGCCGAGATCGAGGTTCACCTCGCCGCGCACCAACTGATCAAGATTCGCG
TGTTCGGCGATGAGCGCGACGAGCGCGTCGCGATCTACGACGAAATCTGCGATCGCCTGAACGCCGCGCCGATTCAGCAC
ATCGGCAAGCTGCTCGTGATCTGGAAGCCCGAGCAGGCGGAGGCTGCGCCGCAGCGCGGCCGCCGCGGCGTGCCGAGCGC
GCGCGAGGCGGCCCGCGCGAGCGCCGCGCAGCCCGACGAGGGCCGCGCCGCGAAGGGCCGCGCGCCGCGCGTCGTCAAGG
TGGTCAAGCAGTCGCCGAACGCGCCCGCCGTGCGCCGGCCGAAGCCGCAGAAGGTGCGCGTGCTCGGCAACGAGCGCGTG
ACGGCGGGCGGCAACGTGAAGCGCGCGAAGAAGCGCCAGTCGAGCGCGAAGCGCCAGCATCAGAACGAGAAGTGA

Upstream 100 bases:

>100_bases
CAAGCCGCGATTTTACGTGGTTTCGGCGCGCCGCCGCGGAAAAGCTTCGTCGCTCGTCCCGGCGCGCGCGCCGTCAATTT
GATTCGAATTCCTCATTCCG

Downstream 100 bases:

>100_bases
TCGCCGCCGGGCGTGCCGCGCGGCCGGTTCGGCCGGCCGGCGGGCCCGCGCACCGCGGTGCGCCGTGGGCTCAGGCGCGC
CGCTCGCCGCCGAGCGGGCT

Product: putative RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MPALSLSPAERSALRSEAHALKPVVLIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGDERDERVAIYDEICDRLNAAPIQH
IGKLLVIWKPEQAEAAPQRGRRGVPSAREAARASAAQPDEGRAAKGRAPRVVKVVKQSPNAPAVRRPKPQKVRVLGNERV
TAGGNVKRAKKRQSSAKRQHQNEK

Sequences:

>Translated_184_residues
MPALSLSPAERSALRSEAHALKPVVLIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGDERDERVAIYDEICDRLNAAPIQH
IGKLLVIWKPEQAEAAPQRGRRGVPSAREAARASAAQPDEGRAAKGRAPRVVKVVKQSPNAPAVRRPKPQKVRVLGNERV
TAGGNVKRAKKRQSSAKRQHQNEK
>Mature_183_residues
PALSLSPAERSALRSEAHALKPVVLIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGDERDERVAIYDEICDRLNAAPIQHI
GKLLVIWKPEQAEAAPQRGRRGVPSAREAARASAAQPDEGRAAKGRAPRVVKVVKQSPNAPAVRRPKPQKVRVLGNERVT
AGGNVKRAKKRQSSAKRQHQNEK

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

Organism=Escherichia coli, GI1789570, Length=87, Percent_Identity=42.5287356321839, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 20042; Mature: 19911

Theoretical pI: Translated: 11.32; Mature: 11.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALSLSPAERSALRSEAHALKPVVLIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGDERD
CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCC
ERVAIYDEICDRLNAAPIQHIGKLLVIWKPEQAEAAPQRGRRGVPSAREAARASAAQPDE
CEEEHHHHHHHHCCCCCHHHCCCEEEEECCCHHHHCHHCCCCCCCHHHHHHHHCCCCCCC
GRAAKGRAPRVVKVVKQSPNAPAVRRPKPQKVRVLGNERVTAGGNVKRAKKRQSSAKRQH
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHH
QNEK
CCCC
>Mature Secondary Structure 
PALSLSPAERSALRSEAHALKPVVLIGAEGLTDAVLAEIEVHLAAHQLIKIRVFGDERD
CCCCCCHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCC
ERVAIYDEICDRLNAAPIQHIGKLLVIWKPEQAEAAPQRGRRGVPSAREAARASAAQPDE
CEEEHHHHHHHHCCCCCHHHCCCEEEEECCCHHHHCHHCCCCCCCHHHHHHHHCCCCCCC
GRAAKGRAPRVVKVVKQSPNAPAVRRPKPQKVRVLGNERVTAGGNVKRAKKRQSSAKRQH
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHHHHHH
QNEK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]