| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
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The map label for this gene is 126454311
Identifier: 126454311
GI number: 126454311
Start: 244063
End: 245199
Strand: Direct
Name: 126454311
Synonym: BURPS1106A_0261
Alternate gene names: NA
Gene position: 244063-245199 (Clockwise)
Preceding gene: 126455308
Following gene: 126454754
Centisome position: 6.12
GC content: 73.09
Gene sequence:
>1137_bases GTGGCGGCGCGCGAAGCCGCGCGCCGCTCGCGTAACGGCGTGCGGCGCGCGGCGACGCACGCCGCACGCGCGCCCCGGCG CTGGCGCGCGCGCTCGCTCGCGAGCGCCGTGCTCGCCGGCGCGTGCGCGACGGGCGGGCTCGCATGGCCGCCCGCCGGCG CGCTGGCGGCGGGCAGCGTCGCGGCCGCGCCGCTGCCGCAGGCGCCGATTCCCGCGCCCGGCATGTCGCTGCCGGGCTTT CACGCGCCGCCGCCGTCGACGTCGAACGGCACGGTCGCGAGCGGCGCGGTACGCACGCAGCCCGCGCGAATGCCGTTCTA CGTCGCGACGAAGGGCAAGGTCACGATCTACGTGCTCGGCACGCTGCATGTCGGCGACCCCGCCGACTATCCGGCGAACC AGCCGTTTCGCCGGCCGATCCTCGCGGCGCTCGCCGCGTCGCCGACGCTCGCGCTCGAACTGTCGCCGGACGACCTGCTC GAATCGCAGGACGACGTATCGAAGTACGGCGTGTGCAACTACGCGTGCCTGCCGCGGCTGTTGCCGCCGCCTCTCTGGCA AAAGCTCGCGAACCGCCTGCGCGGCAATCCGGCCGCGCTCGCCGGCATCCGCAACATGCGGCCCTGGCTCGCGTCGCTCG TCGTCGAGACGTACGATTCGCTGTCGGCCGGCTTGCAGACCGAATACGGCACCGAGGCGCAACTGCAGAACGTGTTCCTG CGCAAGAAGGGCGGCAAGGTGGTCGGGCTCGAGACGCTCGCCGAGCAGATGCGCGCGTTCACGGGGCTCACGCTCGCGCA GCAGCGGGAGATGCTCGCGCAGGACATGGTGCAGACGCCTGCGCAGAACGCGGCCGACGTGCGCGCGCTGCATCGCCTCT GGCGCATCGGCGACGCGGACGCGATCGCCGCCTGGGCGAACGCGAAGACGGAGCGGCTCGCACGCGCGCGGTCGATCGCC GATTCGATCGACAACAAGATCGTCTATGAGCGCAACCGCCGCTTCGTCGCGCGGATGACGGCGATCGCCGCGCCGAACCG GCCGCTGTTCGTCGCGATCGGCTCGTTGCACCTGGGCGGCCCGAAGGGCGTGCTCGAACTGCTTCGGCAGCAGGGCTATC GCGTCGACGCCGGGTAA
Upstream 100 bases:
>100_bases GAGCGGTGCCGCGTCGAGGAGCCGAAGCTGCGCGACGTCGACGGCCGGCTTGTCGCCTGCCATCGCGCCGAGGAGGTGGG GGAGGCGAATGCCTGAGGCA
Downstream 100 bases:
>100_bases TCGGCGCCCGAACGAACGGCGCCCGCGTAGGGATAAACCCGGGATAAGTCCGGGATAACCCGGTATTTCGGCTGTGGCGG GCAAGCAAACGCCGTTCCGA
Product: GumN family protein
Products: NA
Alternate protein names: GumN Protein; SLA2 Protein
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MAAREAARRSRNGVRRAATHAARAPRRWRARSLASAVLAGACATGGLAWPPAGALAAGSVAAAPLPQAPIPAPGMSLPGF HAPPPSTSNGTVASGAVRTQPARMPFYVATKGKVTIYVLGTLHVGDPADYPANQPFRRPILAALAASPTLALELSPDDLL ESQDDVSKYGVCNYACLPRLLPPPLWQKLANRLRGNPAALAGIRNMRPWLASLVVETYDSLSAGLQTEYGTEAQLQNVFL RKKGGKVVGLETLAEQMRAFTGLTLAQQREMLAQDMVQTPAQNAADVRALHRLWRIGDADAIAAWANAKTERLARARSIA DSIDNKIVYERNRRFVARMTAIAAPNRPLFVAIGSLHLGGPKGVLELLRQQGYRVDAG
Sequences:
>Translated_378_residues MAAREAARRSRNGVRRAATHAARAPRRWRARSLASAVLAGACATGGLAWPPAGALAAGSVAAAPLPQAPIPAPGMSLPGF HAPPPSTSNGTVASGAVRTQPARMPFYVATKGKVTIYVLGTLHVGDPADYPANQPFRRPILAALAASPTLALELSPDDLL ESQDDVSKYGVCNYACLPRLLPPPLWQKLANRLRGNPAALAGIRNMRPWLASLVVETYDSLSAGLQTEYGTEAQLQNVFL RKKGGKVVGLETLAEQMRAFTGLTLAQQREMLAQDMVQTPAQNAADVRALHRLWRIGDADAIAAWANAKTERLARARSIA DSIDNKIVYERNRRFVARMTAIAAPNRPLFVAIGSLHLGGPKGVLELLRQQGYRVDAG >Mature_377_residues AAREAARRSRNGVRRAATHAARAPRRWRARSLASAVLAGACATGGLAWPPAGALAAGSVAAAPLPQAPIPAPGMSLPGFH APPPSTSNGTVASGAVRTQPARMPFYVATKGKVTIYVLGTLHVGDPADYPANQPFRRPILAALAASPTLALELSPDDLLE SQDDVSKYGVCNYACLPRLLPPPLWQKLANRLRGNPAALAGIRNMRPWLASLVVETYDSLSAGLQTEYGTEAQLQNVFLR KKGGKVVGLETLAEQMRAFTGLTLAQQREMLAQDMVQTPAQNAADVRALHRLWRIGDADAIAAWANAKTERLARARSIAD SIDNKIVYERNRRFVARMTAIAAPNRPLFVAIGSLHLGGPKGVLELLRQQGYRVDAG
Specific function: Unknown
COG id: COG3735
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40344; Mature: 40213
Theoretical pI: Translated: 11.08; Mature: 11.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAREAARRSRNGVRRAATHAARAPRRWRARSLASAVLAGACATGGLAWPPAGALAAGSV CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC AAAPLPQAPIPAPGMSLPGFHAPPPSTSNGTVASGAVRTQPARMPFYVATKGKVTIYVLG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCEEEEEEE TLHVGDPADYPANQPFRRPILAALAASPTLALELSPDDLLESQDDVSKYGVCNYACLPRL EEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHHCCCCHHHHHHC LPPPLWQKLANRLRGNPAALAGIRNMRPWLASLVVETYDSLSAGLQTEYGTEAQLQNVFL CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH RKKGGKVVGLETLAEQMRAFTGLTLAQQREMLAQDMVQTPAQNAADVRALHRLWRIGDAD HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH AIAAWANAKTERLARARSIADSIDNKIVYERNRRFVARMTAIAAPNRPLFVAIGSLHLGG HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHCHHHHHHHHHHCCCCCCEEEEECCEECCC PKGVLELLRQQGYRVDAG HHHHHHHHHHCCCCCCCC >Mature Secondary Structure AAREAARRSRNGVRRAATHAARAPRRWRARSLASAVLAGACATGGLAWPPAGALAAGSV CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC AAAPLPQAPIPAPGMSLPGFHAPPPSTSNGTVASGAVRTQPARMPFYVATKGKVTIYVLG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEECCCEEEEEEE TLHVGDPADYPANQPFRRPILAALAASPTLALELSPDDLLESQDDVSKYGVCNYACLPRL EEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHHHCCCCHHHHHHC LPPPLWQKLANRLRGNPAALAGIRNMRPWLASLVVETYDSLSAGLQTEYGTEAQLQNVFL CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH RKKGGKVVGLETLAEQMRAFTGLTLAQQREMLAQDMVQTPAQNAADVRALHRLWRIGDAD HCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH AIAAWANAKTERLARARSIADSIDNKIVYERNRRFVARMTAIAAPNRPLFVAIGSLHLGG HHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHCHHHHHHHHHHCCCCCCEEEEECCEECCC PKGVLELLRQQGYRVDAG HHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA