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The map label for this gene is insD1 [C]

Identifier: 126454304

GI number: 126454304

Start: 2676906

End: 2677760

Strand: Reverse

Name: insD1 [C]

Synonym: BURPS1106A_2707

Alternate gene names: 126454304

Gene position: 2677760-2676906 (Counterclockwise)

Preceding gene: 126455024

Following gene: 126452662

Centisome position: 67.14

GC content: 62.46

Gene sequence:

>855_bases
GTGGTGAGCGCGCCCGCCCGACGCCAGCAGGTCACCTATGCGAAAGCACGGGGCCTGTCGGAGCGACGTGCGTGCGCGCT
GATGTCGGTCGCCCGATCGGCGCTGCATTACGAATCAACGCTGGCCGTGCGGGACGCGCCGGTGCTGGCAGCGATGAGCA
TTCTGTCGGCGCAATATCCGCGTTATGGTTACCGCCGCATCCAGATCTTTCTGGAGCGGCAAGGTCACCCGATGAGCGCC
GACCGGGCTTGGCGGCTGTGGCGTCTTGCCGGGTTGCAGGTGCCGCGCAAGCGACCCCGTCGACGCGTGTCGGTCCAACG
CCCTCGGCCGCAGCCGGCGACGGCGGCACGACACGTTTGGGCGTACGACTTCGTATTCGACGCGTGCGCCAACGGCCAGC
AGTTGAAGTGTCTGACGGTGATCGATGAGTACACGCGTGAATGCCTGGCAATCGACGTGGCCGGATCGATTCGTTCCGGA
CGTGTCATCGAAGTCCTGTCCCAACTGGTCAGCCTTCATGGTGCACCTCGTTACTTGCGTTCGGACAACGGCCCAGAGTT
CGTATCGCGGGCCACCCTGAAGTGGGCTGCACAGAACGGCATGGACATGGCGCTTAGCGATCCCGGCAAGCCTTGGCAGA
ACGGCGCGGACGAGAGCTTCAACGGCAAGTTCCGAGATGAATGCTTGAGCCTTGAATGGTTTCGAACGCGCACGGAAGCG
AAGGTTGTGATCGAGCAGTGGCGGCGTCACTACAATGCCATCCGACCGCATTCGAGTCTGGCCTATCTGACGCCCGACGA
GTTCAAGCAGCGGTATTGTTCAACTGAAGCAACCGAGGCCGTTCTCCAAGATTGA

Upstream 100 bases:

>100_bases
AGCGGCTCAAGCAGCTCGAGCAAGAGAATGCGCGGCTGAAGAAGATGCTGGCCGAGCGCGATCTCGAGCTGGACGTGATG
AAAGAGATCAACGCAAAAAA

Downstream 100 bases:

>100_bases
AATGGCCCGAAGAAATCAGGCAGGTCAGCGGGTCAAAAACCCAATCTGATGCAACCGCAAGTTCAGTCACCGAGGCAAGT
GCGGCGTCGGAAGCGAATTG

Product: transposase B

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MVSAPARRQQVTYAKARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYPRYGYRRIQIFLERQGHPMSA
DRAWRLWRLAGLQVPRKRPRRRVSVQRPRPQPATAARHVWAYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSG
RVIEVLSQLVSLHGAPRYLRSDNGPEFVSRATLKWAAQNGMDMALSDPGKPWQNGADESFNGKFRDECLSLEWFRTRTEA
KVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD

Sequences:

>Translated_284_residues
MVSAPARRQQVTYAKARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYPRYGYRRIQIFLERQGHPMSA
DRAWRLWRLAGLQVPRKRPRRRVSVQRPRPQPATAARHVWAYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSG
RVIEVLSQLVSLHGAPRYLRSDNGPEFVSRATLKWAAQNGMDMALSDPGKPWQNGADESFNGKFRDECLSLEWFRTRTEA
KVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD
>Mature_284_residues
MVSAPARRQQVTYAKARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYPRYGYRRIQIFLERQGHPMSA
DRAWRLWRLAGLQVPRKRPRRRVSVQRPRPQPATAARHVWAYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSG
RVIEVLSQLVSLHGAPRYLRSDNGPEFVSRATLKWAAQNGMDMALSDPGKPWQNGADESFNGKFRDECLSLEWFRTRTEA
KVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789424, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789224, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788305, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787669, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786558, Length=255, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789981, Length=223, Percent_Identity=27.8026905829596, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786462, Length=224, Percent_Identity=25.8928571428571, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32427; Mature: 32427

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSAPARRQQVTYAKARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYP
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCC
RYGYRRIQIFLERQGHPMSADRAWRLWRLAGLQVPRKRPRRRVSVQRPRPQPATAARHVW
CCCHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH
AYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSGRVIEVLSQLVSLHGAPRYLR
HHHHHHHHHCCCCCEEEHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHH
SDNGPEFVSRATLKWAAQNGMDMALSDPGKPWQNGADESFNGKFRDECLSLEWFRTRTEA
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD
HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MVSAPARRQQVTYAKARGLSERRACALMSVARSALHYESTLAVRDAPVLAAMSILSAQYP
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCC
RYGYRRIQIFLERQGHPMSADRAWRLWRLAGLQVPRKRPRRRVSVQRPRPQPATAARHVW
CCCHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHH
AYDFVFDACANGQQLKCLTVIDEYTRECLAIDVAGSIRSGRVIEVLSQLVSLHGAPRYLR
HHHHHHHHHCCCCCEEEHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHH
SDNGPEFVSRATLKWAAQNGMDMALSDPGKPWQNGADESFNGKFRDECLSLEWFRTRTEA
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
KVVIEQWRRHYNAIRPHSSLAYLTPDEFKQRYCSTEATEAVLQD
HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]