Click here to switch to the map view.

The map label for this gene is kdgR [H]

Identifier: 126454220

GI number: 126454220

Start: 2133973

End: 2135016

Strand: Reverse

Name: kdgR [H]

Synonym: BURPS1106A_2150

Alternate gene names: 126454220

Gene position: 2135016-2133973 (Counterclockwise)

Preceding gene: 126455132

Following gene: 126452083

Centisome position: 53.53

GC content: 69.54

Gene sequence:

>1044_bases
GTGAGCGATCCACGAACTCAGCCGTCGCGTCCCGCGACGATCAGCGACGTCGCCCGCGAGGCGGGCACCGGCAAAACCAG
CGTCTCGCGCTACCTGAACGGCGAGACGAACGTACTGTCCGCCGACCTGCGCCAGCGCATCGAGACCGCGATCGAGCGCC
TGAACTACCGTCCGAACCAGATGGCGCGCGGCCTGAAGCGCGGCCGCAACCGCCTCCTCGGCCTGCTTGCCGCGGACCTG
ACGAATCCCTACACGGTCGAAGTGCTGCGCGGCGTCGAGGCCGCGTGCCATGCGCTCGGCTACATGCCGCTCATCTGTCA
CGCGGCCAACGAGCTCGAGATGGAGCGCCGCTATCTGCAACTGCTCACGACCTATCGCGTCGAAGGGATGATCGTCAACG
CGCTCGGCGCCGATGAGAACGCGCTGAAATCGCTGCGCGGCGGCGGCATCCCGACCGTGCTCGTCGATCGCAGCGTCGAA
GGCTTCGCGGCCGACATGATCGGCCTCGACAACGCGGCCGCGATCGAGACAGGCTTGCGGCATCTGTTCGCGCGGGGTTT
CCAGTCGCTTCATTTCGTCGTGCAGCCGTTCGAGCACGTGAGCTCGCGGCGGCTGCGCGAGGCCGCGTTCCGCACGCAGG
TGGCGGCCTCCGGGCGGGCGGTGCATCCGACGATCGTGCTCGAGCCGAAGGAGCCGGAATCGACGCAGCGCGCGCTCGCC
GAGCTCGATGCGCGCATCGACGCGGCAGCGGCCGAGAGCGTGCGGCCCGCGATCTTCGCGGCGAACGCGCCCGTCGCGCT
CGCGATCGCGCGGCACCTGCACGCGCGGTTCGGCGACGCGTGGCAGAAGCGCGCCGCGCTGATCGCGATCGACGATCCCG
ACTGGGCGGAGCTGATCGGCGTGACGACGATCCGTCAGCCGACTTACGACATCGGCTATCGCGCGGTCGAGTTCGTCCAC
GAGCGCATCGACGGCGGCACGGGCGATTTCCACGAATCGCTGCTGCCGGGCGAGCTTCACGTGCGCGCGTCGACGGCGAG
CTGA

Upstream 100 bases:

>100_bases
AATCGGCCGACAGGAGACATCGTCAGTTGGCCTTTTCATCCAACAACAATGACCCGCCCGTTCGCGAGGCGGCGCGGGCC
GCTCGTCACGAGGCGCCACT

Downstream 100 bases:

>100_bases
GTTGAGTATCATTCGGGGCACGCACCGCGCCGGTGCGCGTTTCGAACAAGGATTGTCATGACCGTTGCTCCCGTCACGCT
GGCGGCGCTCGTCATCGCCA

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQMARGLKRGRNRLLGLLAADL
TNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQLLTTYRVEGMIVNALGADENALKSLRGGGIPTVLVDRSVE
GFAADMIGLDNAAAIETGLRHLFARGFQSLHFVVQPFEHVSSRRLREAAFRTQVAASGRAVHPTIVLEPKEPESTQRALA
ELDARIDAAAAESVRPAIFAANAPVALAIARHLHARFGDAWQKRAALIAIDDPDWAELIGVTTIRQPTYDIGYRAVEFVH
ERIDGGTGDFHESLLPGELHVRASTAS

Sequences:

>Translated_347_residues
MSDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQMARGLKRGRNRLLGLLAADL
TNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQLLTTYRVEGMIVNALGADENALKSLRGGGIPTVLVDRSVE
GFAADMIGLDNAAAIETGLRHLFARGFQSLHFVVQPFEHVSSRRLREAAFRTQVAASGRAVHPTIVLEPKEPESTQRALA
ELDARIDAAAAESVRPAIFAANAPVALAIARHLHARFGDAWQKRAALIAIDDPDWAELIGVTTIRQPTYDIGYRAVEFVH
ERIDGGTGDFHESLLPGELHVRASTAS
>Mature_346_residues
SDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQMARGLKRGRNRLLGLLAADLT
NPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQLLTTYRVEGMIVNALGADENALKSLRGGGIPTVLVDRSVEG
FAADMIGLDNAAAIETGLRHLFARGFQSLHFVVQPFEHVSSRRLREAAFRTQVAASGRAVHPTIVLEPKEPESTQRALAE
LDARIDAAAAESVRPAIFAANAPVALAIARHLHARFGDAWQKRAALIAIDDPDWAELIGVTTIRQPTYDIGYRAVEFVHE
RIDGGTGDFHESLLPGELHVRASTAS

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=319, Percent_Identity=27.2727272727273, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790369, Length=337, Percent_Identity=24.6290801186944, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787948, Length=319, Percent_Identity=28.5266457680251, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI48994940, Length=187, Percent_Identity=31.0160427807487, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1789202, Length=236, Percent_Identity=29.2372881355932, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788474, Length=181, Percent_Identity=29.2817679558011, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787580, Length=220, Percent_Identity=28.6363636363636, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787906, Length=234, Percent_Identity=26.4957264957265, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790689, Length=216, Percent_Identity=24.0740740740741, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786540, Length=203, Percent_Identity=27.0935960591133, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786268, Length=216, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790715, Length=164, Percent_Identity=29.8780487804878, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789068, Length=325, Percent_Identity=24, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37926; Mature: 37794

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQ
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLTTYRVEGMIVNALGADENALKSLRGGGIPTVLVDRSVEGFAADMIGLDNAAAIETGLR
HHHHHHHCCEEEEECCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCHHHHHHHHH
HLFARGFQSLHFVVQPFEHVSSRRLREAAFRTQVAASGRAVHPTIVLEPKEPESTQRALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCHHHHHHH
ELDARIDAAAAESVRPAIFAANAPVALAIARHLHARFGDAWQKRAALIAIDDPDWAELIG
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHH
VTTIRQPTYDIGYRAVEFVHERIDGGTGDFHESLLPGELHVRASTAS
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCC
>Mature Secondary Structure 
SDPRTQPSRPATISDVAREAGTGKTSVSRYLNGETNVLSADLRQRIETAIERLNYRPNQ
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGLLAADLTNPYTVEVLRGVEAACHALGYMPLICHAANELEMERRYLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LLTTYRVEGMIVNALGADENALKSLRGGGIPTVLVDRSVEGFAADMIGLDNAAAIETGLR
HHHHHHHCCEEEEECCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHCCCCHHHHHHHHH
HLFARGFQSLHFVVQPFEHVSSRRLREAAFRTQVAASGRAVHPTIVLEPKEPESTQRALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCHHHHHHH
ELDARIDAAAAESVRPAIFAANAPVALAIARHLHARFGDAWQKRAALIAIDDPDWAELIG
HHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHHH
VTTIRQPTYDIGYRAVEFVHERIDGGTGDFHESLLPGELHVRASTAS
HHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]