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The map label for this gene is pcaC [H]

Identifier: 126454212

GI number: 126454212

Start: 2363230

End: 2363757

Strand: Direct

Name: pcaC [H]

Synonym: BURPS1106A_2398

Alternate gene names: 126454212

Gene position: 2363230-2363757 (Clockwise)

Preceding gene: 126452575

Following gene: 126453184

Centisome position: 59.25

GC content: 64.58

Gene sequence:

>528_bases
ATGGAATTCATCGAATCGATTAAGGCTCAGATTCCCGACTACGCGAAGGACATTCGCCTGAACCTCGACGGCACGATCTC
GCGCTCGTCGCTCGAAGGCACGGACGCGGTCGGCGCGGCGCTCGCCGCAGCCTTCGCGGCCAAGAGCCCGGTGCTCGTGA
AGGCGATCCGCGAAGCGGGCGTGCTGTCGCCCGAGGAAACCCAGGCGGCGCTGACGGCTGCCGCGCTGATGGGGATGAAC
AACGCCTGGTATCCGTATGTCGAGATGGCCGACGACGCCGACCTGAAGACGCAGCGCGCCGAGCTGCGGATGGGCGCGTA
CGCCACGCACGGCGGCGTCGACAAGCGCAAGTTCGAGATGTACGCGCTCGCCGCGTCGATCGTCGGCAAGTGCCACTTCT
GCGTGAAATCGCACTACGCGTTGCTCAAGAACGAACAAGGGATGACAGTCACGCAACTGCGCGACGTCGGCCGGATCGCG
GCAGTGATCAATGCCGCCGCGCAAGTGATCTCGGCGGAAGGCAAGTAA

Upstream 100 bases:

>100_bases
CGATCGGCGGCGCGACGCTGTAAGCGTCCGATGCACGAAAGCCCGCGGCGCTGCGTCTTGCCTGCGGGCTTTTTTAACGG
CCCAATCATAGGAGATATCA

Downstream 100 bases:

>100_bases
GCGCGGCCATGCCCGCCGCGGTCGCTCACGTTCGCGGCGCGGCCGGCTGGCCAGGCTGGCTCGCGTTGCAATGAACACGC
CACGCGGCGGTTGCGCGTGG

Product: 4-carboxymuconolactone decarboxylase

Products: NA

Alternate protein names: Alkylhydroperoxidase AhpD [H]

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MEFIESIKAQIPDYAKDIRLNLDGTISRSSLEGTDAVGAALAAAFAAKSPVLVKAIREAGVLSPEETQAALTAAALMGMN
NAWYPYVEMADDADLKTQRAELRMGAYATHGGVDKRKFEMYALAASIVGKCHFCVKSHYALLKNEQGMTVTQLRDVGRIA
AVINAAAQVISAEGK

Sequences:

>Translated_175_residues
MEFIESIKAQIPDYAKDIRLNLDGTISRSSLEGTDAVGAALAAAFAAKSPVLVKAIREAGVLSPEETQAALTAAALMGMN
NAWYPYVEMADDADLKTQRAELRMGAYATHGGVDKRKFEMYALAASIVGKCHFCVKSHYALLKNEQGMTVTQLRDVGRIA
AVINAAAQVISAEGK
>Mature_175_residues
MEFIESIKAQIPDYAKDIRLNLDGTISRSSLEGTDAVGAALAAAFAAKSPVLVKAIREAGVLSPEETQAALTAAALMGMN
NAWYPYVEMADDADLKTQRAELRMGAYATHGGVDKRKFEMYALAASIVGKCHFCVKSHYALLKNEQGMTVTQLRDVGRIA
AVINAAAQVISAEGK

Specific function: Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity [H]

COG id: COG2128

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AhpD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004674
- InterPro:   IPR004675
- InterPro:   IPR003779 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 18680; Mature: 18680

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFIESIKAQIPDYAKDIRLNLDGTISRSSLEGTDAVGAALAAAFAAKSPVLVKAIREAG
CHHHHHHHHHCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
VLSPEETQAALTAAALMGMNNAWYPYVEMADDADLKTQRAELRMGAYATHGGVDKRKFEM
CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
YALAASIVGKCHFCVKSHYALLKNEQGMTVTQLRDVGRIAAVINAAAQVISAEGK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEFIESIKAQIPDYAKDIRLNLDGTISRSSLEGTDAVGAALAAAFAAKSPVLVKAIREAG
CHHHHHHHHHCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHC
VLSPEETQAALTAAALMGMNNAWYPYVEMADDADLKTQRAELRMGAYATHGGVDKRKFEM
CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH
YALAASIVGKCHFCVKSHYALLKNEQGMTVTQLRDVGRIAAVINAAAQVISAEGK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA