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The map label for this gene is rbfA [H]

Identifier: 126454142

GI number: 126454142

Start: 1724377

End: 1724793

Strand: Direct

Name: rbfA [H]

Synonym: BURPS1106A_1763

Alternate gene names: 126454142

Gene position: 1724377-1724793 (Clockwise)

Preceding gene: 126455003

Following gene: 126454073

Centisome position: 43.23

GC content: 60.19

Gene sequence:

>417_bases
ATGAACGGGGTCGCGCGCTTCGCCGATCAACCGGATGGCGGATTTATCATGTCGAAAAAACGCAGTTCTCCCAATCGCAA
CGTGCAGATCGCCGATCAGATCCAGCGCGATCTGTCGGAACTCATCATGCGCGAGGTCAAGGATCCGCGCATCGGGATCG
TGACGATCCAGTCGGTCGAGCTCACGCCCGACTATGCGCACGCAAAGGTCTATTTCACCGCGCTCACCGGCACGCCGGCG
GACACGCAGGAAGCGCTCAACCATGCGGCCGGCCATTTGCACAATCTGCTCTTCAAGCGCCTGCACATTCACACGGTGCC
GACGCTGCATTTCCATTACGACCAGACGATCGAGAAAGCCGTCGCGATGTCGCGCCTCATCGACGAGGCGAACGCGACGC
GCGCGAAGGACGATTGA

Upstream 100 bases:

>100_bases
GTTCGAAGTGTTCGAGGTCACGGAAGTCGCGCGTACGCTGTAACGCAGGCGTGACGGCTTGAATGGGCGGGTCGGGCTTG
GGCCCGTCCCGCCCATTTTC

Downstream 100 bases:

>100_bases
GCATCGCACGAGCCTTGGTGCAGACCATGACGACTGTTTCGCCCCGCCCCCGGATGGCCCGCCGCGCGCTCGATGGCGTG
CTGCTGCTCGACAAGCCGGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNGVARFADQPDGGFIMSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGTPA
DTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD

Sequences:

>Translated_138_residues
MNGVARFADQPDGGFIMSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGTPA
DTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD
>Mature_138_residues
MNGVARFADQPDGGFIMSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGTPA
DTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=35.3448275862069, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15485; Mature: 15485

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGVARFADQPDGGFIMSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVE
CCCCCCCCCCCCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
LTPDYAHAKVYFTALTGTPADTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKA
ECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
VAMSRLIDEANATRAKDD
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNGVARFADQPDGGFIMSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVE
CCCCCCCCCCCCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
LTPDYAHAKVYFTALTGTPADTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKA
ECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
VAMSRLIDEANATRAKDD
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA