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The map label for this gene is yeaM [H]

Identifier: 126454131

GI number: 126454131

Start: 2490119

End: 2490982

Strand: Direct

Name: yeaM [H]

Synonym: BURPS1106A_2532

Alternate gene names: 126454131

Gene position: 2490119-2490982 (Clockwise)

Preceding gene: 126453591

Following gene: 126453382

Centisome position: 62.43

GC content: 72.11

Gene sequence:

>864_bases
ATGAGCCCGTCCGTTCCCCTTTTCGCGCAGCCCCCGGCCGCCACGATCGACGTTCCGTCCGAATTCGCGCCCACCCGCTC
GCACCCGATGCGCGTGCGCGCCCGCGCGATCGCGGCCGGCATGCGCGTGCCGCCGCACGCGCATGCCTGGGCGCAGCTCG
CGTACGCGTCGCGCGGCGTGCTGCGGCTCGCGACGGCCGGCTCGACGTGGATGGTGCCGCCCTCGCGCGCGATCTGGGTG
CCGCCGCGAATTGCCCACGAAGTGGTGATCGTCGAGGACGCGTATCTGCGCACGCTGTACGTCGACGAATCGGCGGTGCC
GGGCGGGCTCGACGCGTGCCGGGTGGTCGAGGTGTCGGGATTGCTGCGCGAGCTGATCGTCGCGCTCGAGGCGCGCTCGC
TCAATCGCACGCGCGAGCGGCTGCTGGCCGAGCTCGTGCTCGACGAGCTCACGCGCGCCGAGCCATTGCCGCTCGCCGTG
CCGATGCCGACCGAAAAGCGCTTGCGCGCGCTGTGCGAAGCGGTGCTCGCGCATCCGGCGCAGGGCGAATCGCTCGAGCA
CTGGGCGGCGGGCGTCGGCGCGAGCACGCGGACGATCGCGCGGCTGTTCAAGCAGGAACTCGGCGTGAGCTTTTCGCAAT
GGCGCCAGCAGGCGCTGCTCGCGCGCGCGATTCCGCTCCTGAACCAGGGGCGGCCGCTGTCGCACATCGCCAACGAACTC
GGCTACCAGAGCCAGAGCGCGTTCTCCGCGATGTTCCGGCGCGCGTTCGGCGCGAGCCCGCGCGCGTTCATTCAGCGCGG
CGACATGCATGCGGCGTCGGAGCTCGCGTCGACCGACGATGGGGATGCGGAACCGCTGCTGTGA

Upstream 100 bases:

>100_bases
TCGATCCGGCATTATCGGCGAAGAAAATTCCCCGCTGCGGCGGGTAGAAGGCTCGCCCTACAATAGCCGGATGCCCCCTG
CGCCCCGTCTTCGATCACCG

Downstream 100 bases:

>100_bases
GCGCGGTCGATTCTCGGGATTGGGTTATCGCGGGCGCTTCCGCCGCTTCCGCCGCTTCCGTCGCTTCTGTCGCTGAAGCC
GCTGAAGTCGCTGAAGTCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSPSVPLFAQPPAATIDVPSEFAPTRSHPMRVRARAIAAGMRVPPHAHAWAQLAYASRGVLRLATAGSTWMVPPSRAIWV
PPRIAHEVVIVEDAYLRTLYVDESAVPGGLDACRVVEVSGLLRELIVALEARSLNRTRERLLAELVLDELTRAEPLPLAV
PMPTEKRLRALCEAVLAHPAQGESLEHWAAGVGASTRTIARLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIANEL
GYQSQSAFSAMFRRAFGASPRAFIQRGDMHAASELASTDDGDAEPLL

Sequences:

>Translated_287_residues
MSPSVPLFAQPPAATIDVPSEFAPTRSHPMRVRARAIAAGMRVPPHAHAWAQLAYASRGVLRLATAGSTWMVPPSRAIWV
PPRIAHEVVIVEDAYLRTLYVDESAVPGGLDACRVVEVSGLLRELIVALEARSLNRTRERLLAELVLDELTRAEPLPLAV
PMPTEKRLRALCEAVLAHPAQGESLEHWAAGVGASTRTIARLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIANEL
GYQSQSAFSAMFRRAFGASPRAFIQRGDMHAASELASTDDGDAEPLL
>Mature_286_residues
SPSVPLFAQPPAATIDVPSEFAPTRSHPMRVRARAIAAGMRVPPHAHAWAQLAYASRGVLRLATAGSTWMVPPSRAIWVP
PRIAHEVVIVEDAYLRTLYVDESAVPGGLDACRVVEVSGLLRELIVALEARSLNRTRERLLAELVLDELTRAEPLPLAVP
MPTEKRLRALCEAVLAHPAQGESLEHWAAGVGASTRTIARLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIANELG
YQSQSAFSAMFRRAFGASPRAFIQRGDMHAASELASTDDGDAEPLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=251, Percent_Identity=33.4661354581673, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31232; Mature: 31101

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSVPLFAQPPAATIDVPSEFAPTRSHPMRVRARAIAAGMRVPPHAHAWAQLAYASRGV
CCCCCCCEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCE
LRLATAGSTWMVPPSRAIWVPPRIAHEVVIVEDAYLRTLYVDESAVPGGLDACRVVEVSG
EEEEECCCEEECCCCCEEECCCHHHCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHH
LLRELIVALEARSLNRTRERLLAELVLDELTRAEPLPLAVPMPTEKRLRALCEAVLAHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCC
QGESLEHWAAGVGASTRTIARLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIANEL
CCCCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GYQSQSAFSAMFRRAFGASPRAFIQRGDMHAASELASTDDGDAEPLL
CCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SPSVPLFAQPPAATIDVPSEFAPTRSHPMRVRARAIAAGMRVPPHAHAWAQLAYASRGV
CCCCCCEECCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCE
LRLATAGSTWMVPPSRAIWVPPRIAHEVVIVEDAYLRTLYVDESAVPGGLDACRVVEVSG
EEEEECCCEEECCCCCEEECCCHHHCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHH
LLRELIVALEARSLNRTRERLLAELVLDELTRAEPLPLAVPMPTEKRLRALCEAVLAHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCC
QGESLEHWAAGVGASTRTIARLFKQELGVSFSQWRQQALLARAIPLLNQGRPLSHIANEL
CCCCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
GYQSQSAFSAMFRRAFGASPRAFIQRGDMHAASELASTDDGDAEPLL
CCCHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]