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The map label for this gene is gspF [H]

Identifier: 126454081

GI number: 126454081

Start: 12163

End: 13380

Strand: Direct

Name: gspF [H]

Synonym: BURPS1106A_0009

Alternate gene names: 126454081

Gene position: 12163-13380 (Clockwise)

Preceding gene: 126454977

Following gene: 126453917

Centisome position: 0.3

GC content: 68.8

Gene sequence:

>1218_bases
ATGCCGGCCTTCCGTTTCGAAGCGATCGACGCGTCGGGGCGCGCGCAAAAAGGCGTGATCGAAGCCGACAGCGCGCGCAA
CGCGCGCGGCCAGCTGCGCACGCAGGGCTTGACGCCGCTCGTCGTCGAGCCGGCCGCGAGCGCGCAGCGCGGCGCGCGCA
GCCAGCGCCTCGCGCTCGGCCGCAAGCTGTCGCAGCGCGAGCAGGCGATCCTCACGCGCCAGCTCGCGAGCCTGCTCGTC
GCCGGGCTGCCGCTCGACGAGGCGCTCGCGGTGCTGACCGAGCAGGCCGAGCGCGATTACATCCGCGAGCTGATGGCCGC
GATCCGCGCGGAAGTGCTCGGCGGCCATTCGCTCGCGAACGCGCTCACGCAGCATCCGCGCGATTTTCCGGAGATCTACC
GCGCGCTCGTCGCGGCGGGCGAGCACACCGGCAAGCTCGGCATCGTGCTGTCGCGGCTCGCCGACTACATCGAGGAGCGC
AACGCACTCAAGCAGAAAATCCTGCTCGCGTTCACGTATCCGGCGATCGTCACGGTGATCGCGTTCGGCATCGTTACGTT
CCTGCTGAGCTACGTGGTGCCGCAGGTCGTCAACGTGTTCGCGAGCACGAAACAGCAGTTGCCGGTGCTCACGATCGTGA
TGATGGCGCTGTCCGATTTCGTCAGACACTGGTGGTGGGCGATCCTGATCGGGATCGCGGCCGTCGTCTATCTGGTGAAG
GCGACGCTCTCGCGCGACGGCCCGCGCCTCGCGTTCGACCGCTGGCTTTTGACCGCCCCGCTCGCGGGCAAGCTCGTGCG
CGGCTACAACACGGTGCGCTTCGCGAGCACGCTCGGCATCCTGACTGCGGCGGGCGTGCCGATCCTGCGCGCGCTGCAGG
CAGCGGGCGAGACGCTGTCGAACCGCGCGATGCGCGGCAACATCGACGACGCGATCGTGCGCGTGCGCGAAGGCTCGGCG
CTCTCGCGCGCGCTCAACAACGTGAAGACGTTTCCGCCCGTGCTCGTGCACCTGATCCGCTCGGGCGAGGCCACGGGCGA
CGTGACGACGATGCTCGACCGCGCGGCCGAAGGCGAATCGCGCGAGCTCGAGCGGCGCACGATGTTCCTCACGAGCCTGC
TCGAGCCGCTGCTGATTCTCGCGATGGGCGGCATCGTGCTCGTGATCGTGCTGGCGGTGATGCTGCCGATCATCGAGCTG
AACAACATGGTGCAGTGA

Upstream 100 bases:

>100_bases
AACGGGATGCGCACGCTGCGCGACGACGCCGAGCGCTGGCTCGCGGCGGGCGCGACGTCGCTCGAGGAAGTGCTGCGCGT
GACGGGAGGCGCATAGCGTC

Downstream 100 bases:

>100_bases
CGGAAGGCCGGCGCGGCCCGCGGCGGCGGGCCGGCCGAAGCGAAGCGGCGCGCCGGACGGCGCGCTCGGCTTCAGCGGAC
GTAGATCGCCGGCGACGGCG

Product: general secretion pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALGRKLSQREQAILTRQLASLLV
AGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSLANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEER
NALKQKILLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYLVK
ATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGETLSNRAMRGNIDDAIVRVREGSA
LSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEGESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIEL
NNMVQ

Sequences:

>Translated_405_residues
MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALGRKLSQREQAILTRQLASLLV
AGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSLANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEER
NALKQKILLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYLVK
ATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGETLSNRAMRGNIDDAIVRVREGSA
LSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEGESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIEL
NNMVQ
>Mature_404_residues
PAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALGRKLSQREQAILTRQLASLLVA
GLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSLANALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERN
ALKQKILLAFTYPAIVTVIAFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYLVKA
TLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGETLSNRAMRGNIDDAIVRVREGSAL
SRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEGESRELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELN
NMVQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=402, Percent_Identity=35.0746268656716, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1786295, Length=402, Percent_Identity=29.8507462686567, Blast_Score=154, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR011850
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44102; Mature: 43971

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALG
CCCCCCEECCCCCCCCCCCEECCCCCCCHHHHHHCCCCCEEECCCHHHHHCCHHHHHHHH
RKLSQREQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSLAN
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVTVI
HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYLVK
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGETLS
HHHCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NRAMRGNIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEGES
CCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
RELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAFRFEAIDASGRAQKGVIEADSARNARGQLRTQGLTPLVVEPAASAQRGARSQRLALG
CCCCCEECCCCCCCCCCCEECCCCCCCHHHHHHCCCCCEEECCCHHHHHCCHHHHHHHH
RKLSQREQAILTRQLASLLVAGLPLDEALAVLTEQAERDYIRELMAAIRAEVLGGHSLAN
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
ALTQHPRDFPEIYRALVAAGEHTGKLGIVLSRLADYIEERNALKQKILLAFTYPAIVTVI
HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGIVTFLLSYVVPQVVNVFASTKQQLPVLTIVMMALSDFVRHWWWAILIGIAAVVYLVK
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATLSRDGPRLAFDRWLLTAPLAGKLVRGYNTVRFASTLGILTAAGVPILRALQAAGETLS
HHHCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NRAMRGNIDDAIVRVREGSALSRALNNVKTFPPVLVHLIRSGEATGDVTTMLDRAAEGES
CCCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCH
RELERRTMFLTSLLEPLLILAMGGIVLVIVLAVMLPIIELNNMVQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1588814; 10984043 [H]