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The map label for this gene is xerC [H]

Identifier: 126454019

GI number: 126454019

Start: 3801915

End: 3802847

Strand: Reverse

Name: xerC [H]

Synonym: BURPS1106A_3892

Alternate gene names: 126454019

Gene position: 3802847-3801915 (Counterclockwise)

Preceding gene: 126453151

Following gene: 126453245

Centisome position: 95.35

GC content: 63.67

Gene sequence:

>933_bases
ATGGTGCCGGCGCTCGTCGCGTCGGCTGGCGAGCGCGCCGGTGTGTGCTTTGTCGAGTTCTTCGCGTCGGCGATCCGCAA
CCCGCACACTCGACGCGCGTATGCGCGCGCGGCCAGTGACTTCCTGACGTGGTGCGCCGACGCCGGTGTGTCGTCGATCA
CCGCCGTGCAGCCGCTGCATGTCGCGAGCTGGGTCGAGTTGCAGACCCGCACACACGCGGCGTCGACCGTCAAGCAGCGC
CTGGCAGCGATCCGCCACCTGTTCGACTGGCTGGTCACCGGCCAGGTCGTACCCGTGAACTCGGCCGCATCGGTGCGCAG
CCCAAGCCACACGGTGCGCACCTGTGCCACTCCCGTGTTGGATCCCGCCGAGGCACGGCAACTGCTCGACAGCATCGATG
TGAGCACGCCGATCGGTCTGCGAGACCGCGCGCTGATCGCGCTGATGGTGTTTTCGTTCGCGCGGATCGGCGCGGCGCTT
GCGATGCGGGTCGATGACGTATATGTGCAGCAACGACGGCTTTGGATACGCCTGCGCGAAAAAGGTGACAAGGCACATGC
GATGCCGTGCCACCACACACTTGAGATGGCCCTGCGCGCTTATTTAGACGGTACCGGCATAGTGTTTGATCCGAAGGGAG
CACTGTTCCGCACGATCGCGCGTGGCACTGGACAACTGAGCGAGACCACATTGGCACAGGCCAATGCCTACGTGATGGTG
CGGCGTCGGGCAGCCGCGGCAGGCATTGCGACGAAGATTGGCAGTCACGCGCTCCGTGCGACGGGCATAACCACGTACTT
GCGGAACGGCGGCACGCTTGAGAACGCTGCGGCAATAGCGAATCACGTATCAACACGCAGCACGCAGCGTTATGGCGATC
CTTCAAGGGCAATCGATATTGAGGAGGTCGAGCGCATATCCTTATATGCGTGA

Upstream 100 bases:

>100_bases
ACGGTCGAGTTGCTGATGTTTGCCGCGAAAACGTACCTCGAGGGCAAAATCAAGGGGCTGATTGGTGGCTAATGTAACCC
CCGCCCTCCCCTCTGGGGCC

Downstream 100 bases:

>100_bases
GTCAAGACCTAGTCTCCCAGTCAGCGTCAGACCGGGTCTAAGATTCCTCGCCGTGCCTGCAGCAAGTGCCGTGATCGACT
TGTTGCGATCGTTGGTCTCT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MVPALVASAGERAGVCFVEFFASAIRNPHTRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVELQTRTHAASTVKQR
LAAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATPVLDPAEARQLLDSIDVSTPIGLRDRALIALMVFSFARIGAAL
AMRVDDVYVQQRRLWIRLREKGDKAHAMPCHHTLEMALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMV
RRRAAAAGIATKIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGDPSRAIDIEEVERISLYA

Sequences:

>Translated_310_residues
MVPALVASAGERAGVCFVEFFASAIRNPHTRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVELQTRTHAASTVKQR
LAAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATPVLDPAEARQLLDSIDVSTPIGLRDRALIALMVFSFARIGAAL
AMRVDDVYVQQRRLWIRLREKGDKAHAMPCHHTLEMALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMV
RRRAAAAGIATKIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGDPSRAIDIEEVERISLYA
>Mature_310_residues
MVPALVASAGERAGVCFVEFFASAIRNPHTRRAYARAASDFLTWCADAGVSSITAVQPLHVASWVELQTRTHAASTVKQR
LAAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATPVLDPAEARQLLDSIDVSTPIGLRDRALIALMVFSFARIGAAL
AMRVDDVYVQQRRLWIRLREKGDKAHAMPCHHTLEMALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMV
RRRAAAAGIATKIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGDPSRAIDIEEVERISLYA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=272, Percent_Identity=22.7941176470588, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33613; Mature: 33613

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPALVASAGERAGVCFVEFFASAIRNPHTRRAYARAASDFLTWCADAGVSSITAVQPLH
CCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHH
VASWVELQTRTHAASTVKQRLAAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHCCCCC
DPAEARQLLDSIDVSTPIGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLRE
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGDKAHAMPCHHTLEMALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMV
CCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHCCCEEEE
RRRAAAAGIATKIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGDPSRAIDI
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
EEVERISLYA
HHHHHHHCCC
>Mature Secondary Structure
MVPALVASAGERAGVCFVEFFASAIRNPHTRRAYARAASDFLTWCADAGVSSITAVQPLH
CCCCHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHH
VASWVELQTRTHAASTVKQRLAAIRHLFDWLVTGQVVPVNSAASVRSPSHTVRTCATPVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHCCCCC
DPAEARQLLDSIDVSTPIGLRDRALIALMVFSFARIGAALAMRVDDVYVQQRRLWIRLRE
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGDKAHAMPCHHTLEMALRAYLDGTGIVFDPKGALFRTIARGTGQLSETTLAQANAYVMV
CCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCHHHHHHHHCCCEEEE
RRRAAAAGIATKIGSHALRATGITTYLRNGGTLENAAAIANHVSTRSTQRYGDPSRAIDI
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
EEVERISLYA
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12828649 [H]