Click here to switch to the map view.

The map label for this gene is yneJ [H]

Identifier: 126454011

GI number: 126454011

Start: 1614760

End: 1615785

Strand: Reverse

Name: yneJ [H]

Synonym: BURPS1106A_1661

Alternate gene names: 126454011

Gene position: 1615785-1614760 (Counterclockwise)

Preceding gene: 126454044

Following gene: 126451668

Centisome position: 40.51

GC content: 72.51

Gene sequence:

>1026_bases
TTGACCGATCATTCTCGAAAAATGAATAATTCAGATTCGATCCATCCCACGGAGAGAATCATGGATCTGGCGGCTCTCGC
GATCTTTCGCGCGGTCGTGCGCGAGAACGGCGTGACGCGCGCGGCGGCAAAGCTCAACCGTGTGCAATCGAACGTCACGA
CGCGCATCAAGCAACTGGAGGAGCAGCTCGGCGCGCCGCTTTTCGTGCGCGACGGCCGCCGGCTCGTGCTCACCCCGGCC
GGCGAGACGCTGCTGCCGTATGCGGAGCGTCTGCTCGCGCTCGCCGACGAGGCGCGCCACGCGGTCACCGAAAACCGGCC
GCACGGCCGGTTGCGGCTCGGCGCGATGGAAAGCACCGCGGCGAGCCGCCTGCCCGCCTTGCTCGCCCGCTACCACCAGG
CGTGGCCCGACGTCACGCTCGAGCTCGTCACCGGCACGACGGGCAAGCTGATCGGTCTCGTGCGCGACTTCGAGCTCGAC
GCCGCGCTCGTCGCGACGCCGGCCGGCTCCGAGGCGCTCGGCGAGCCGTTCGAGACGGCGTCCGCGTTCACCGAAGAACT
GGTGCTGCTCACGCCGCGCGGCCATCCGCGCGTGCGCACGCCGCGCGACGTGCGGCTGCCGACGCTCGTCGCGTTCGAGC
GCGGCTGCGCGTACCGCGGCTGCGTCGAGCGCTGGTACGCGGCGGAGGGGCTGAAGCCCGAGCGCGTGCTCGAACTCGGC
TCGTATCACGCGATCGTCGCGTGCGTCGCGGCGGGCGCGGGCGTCGCGGTCGCGCCGCGCTCGGTGCTCGCCGTCCAGCG
CGAGCCGGACAGCCTCGGCGTGCACCCGATCGACGGCATGCCGCCGATCGATACGATGCTCGTCTGGCGCCAGGGGCATT
TCTCGGCGGCGCTCGCCGCGCTGCGCGACGCGTTGCGCGACGCCGCCGCCGCGGCGAACGCCACCGACGTCGCGGCGCAC
GAAGCGGCGAAGGTCGCGCCCCGGCGCACGCGGCGCGGCGCCGCGCGCGAAACGCTGCCGGCTTGA

Upstream 100 bases:

>100_bases
GGTAGAGAGTTCATCGTTTCGAGGGGCGAAGCGGCCACGCCATCGGGTCGGAAGCATCGCGGCCGGTCAAGATCATGGTC
GAAGTCGATTCGATGCTAGC

Downstream 100 bases:

>100_bases
TACGGGCAGGCGCGAATGCGTCCGGCGCGTCACGGTCACGGTCACGGTCACGGTCACGGTCGCGGTCCGGTCACGGTCGC
GGTCGTCGTGACGTGACGTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MTDHSRKMNNSDSIHPTERIMDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLEEQLGAPLFVRDGRRLVLTPA
GETLLPYAERLLALADEARHAVTENRPHGRLRLGAMESTAASRLPALLARYHQAWPDVTLELVTGTTGKLIGLVRDFELD
AALVATPAGSEALGEPFETASAFTEELVLLTPRGHPRVRTPRDVRLPTLVAFERGCAYRGCVERWYAAEGLKPERVLELG
SYHAIVACVAAGAGVAVAPRSVLAVQREPDSLGVHPIDGMPPIDTMLVWRQGHFSAALAALRDALRDAAAAANATDVAAH
EAAKVAPRRTRRGAARETLPA

Sequences:

>Translated_341_residues
MTDHSRKMNNSDSIHPTERIMDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLEEQLGAPLFVRDGRRLVLTPA
GETLLPYAERLLALADEARHAVTENRPHGRLRLGAMESTAASRLPALLARYHQAWPDVTLELVTGTTGKLIGLVRDFELD
AALVATPAGSEALGEPFETASAFTEELVLLTPRGHPRVRTPRDVRLPTLVAFERGCAYRGCVERWYAAEGLKPERVLELG
SYHAIVACVAAGAGVAVAPRSVLAVQREPDSLGVHPIDGMPPIDTMLVWRQGHFSAALAALRDALRDAAAAANATDVAAH
EAAKVAPRRTRRGAARETLPA
>Mature_340_residues
TDHSRKMNNSDSIHPTERIMDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLEEQLGAPLFVRDGRRLVLTPAG
ETLLPYAERLLALADEARHAVTENRPHGRLRLGAMESTAASRLPALLARYHQAWPDVTLELVTGTTGKLIGLVRDFELDA
ALVATPAGSEALGEPFETASAFTEELVLLTPRGHPRVRTPRDVRLPTLVAFERGCAYRGCVERWYAAEGLKPERVLELGS
YHAIVACVAAGAGVAVAPRSVLAVQREPDSLGVHPIDGMPPIDTMLVWRQGHFSAALAALRDALRDAAAAANATDVAAHE
AAKVAPRRTRRGAARETLPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=279, Percent_Identity=40.1433691756272, Blast_Score=208, Evalue=5e-55,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=30.8474576271186, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1788887, Length=289, Percent_Identity=29.757785467128, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082132, Length=264, Percent_Identity=30.3030303030303, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1790208, Length=260, Percent_Identity=31.9230769230769, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI157672245, Length=262, Percent_Identity=28.6259541984733, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=28.0487804878049, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787879, Length=290, Percent_Identity=30.3448275862069, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI48994962, Length=113, Percent_Identity=41.5929203539823, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788626, Length=266, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787601, Length=172, Percent_Identity=26.7441860465116, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI2367136, Length=294, Percent_Identity=28.9115646258503, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=248, Percent_Identity=25.4032258064516, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=27.9352226720648, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788748, Length=302, Percent_Identity=27.1523178807947, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=245, Percent_Identity=24.0816326530612, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=131, Percent_Identity=35.1145038167939, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790399, Length=279, Percent_Identity=24.3727598566308, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=127, Percent_Identity=33.8582677165354, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI87081904, Length=224, Percent_Identity=26.3392857142857, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36827; Mature: 36695

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDHSRKMNNSDSIHPTERIMDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EQLGAPLFVRDGRRLVLTPAGETLLPYAERLLALADEARHAVTENRPHGRLRLGAMESTA
HHHCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHH
ASRLPALLARYHQAWPDVTLELVTGTTGKLIGLVRDFELDAALVATPAGSEALGEPFETA
HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHCCCHHHH
SAFTEELVLLTPRGHPRVRTPRDVRLPTLVAFERGCAYRGCVERWYAAEGLKPERVLELG
HHHHHCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHC
SYHAIVACVAAGAGVAVAPRSVLAVQREPDSLGVHPIDGMPPIDTMLVWRQGHFSAALAA
CHHHHHHHHHCCCCCEECCHHHEEEECCCCCCCCCCCCCCCCHHHHHEEECCHHHHHHHH
LRDALRDAAAAANATDVAAHEAAKVAPRRTRRGAARETLPA
HHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDHSRKMNNSDSIHPTERIMDLAALAIFRAVVRENGVTRAAAKLNRVQSNVTTRIKQLE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EQLGAPLFVRDGRRLVLTPAGETLLPYAERLLALADEARHAVTENRPHGRLRLGAMESTA
HHHCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCHHHHH
ASRLPALLARYHQAWPDVTLELVTGTTGKLIGLVRDFELDAALVATPAGSEALGEPFETA
HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCHHHCCCHHHH
SAFTEELVLLTPRGHPRVRTPRDVRLPTLVAFERGCAYRGCVERWYAAEGLKPERVLELG
HHHHHCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHC
SYHAIVACVAAGAGVAVAPRSVLAVQREPDSLGVHPIDGMPPIDTMLVWRQGHFSAALAA
CHHHHHHHHHCCCCCEECCHHHEEEECCCCCCCCCCCCCCCCHHHHHEEECCHHHHHHHH
LRDALRDAAAAANATDVAAHEAAKVAPRRTRRGAARETLPA
HHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]