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The map label for this gene is rbsC [H]

Identifier: 126454007

GI number: 126454007

Start: 1822307

End: 1823320

Strand: Direct

Name: rbsC [H]

Synonym: BURPS1106A_1869

Alternate gene names: 126454007

Gene position: 1822307-1823320 (Clockwise)

Preceding gene: 126455157

Following gene: 126454096

Centisome position: 45.69

GC content: 69.92

Gene sequence:

>1014_bases
ATGAACCACCGATCCATCGACCGAAACGCCGACGCCCCGTCCGGGCCGGCGGGCACCGTCGCGGCGAAGCCGGCCGGCGT
GCGGCTCGGCCTGTCGAATTACGTCGGGCTCGCGCTCGCGCTTCTCGCGCTGATCGCGCTCTTCTCGGTGCTCAGCTCGC
ACTTTCTCACGTACGACACGTTCAGCACGATCGCGAACCAGATTCCCGACCTCGTCGTGCTGTCGGTCGGCATGACCTTC
GTCCTCATCATCGCGGGGATCGACCTGTCGGTGGGCTCGGTGCTCGCGCTCGCGGCGTCGGTCGTGAGCGTCGCCGCGCT
GCGCGGGCAGTGGCCGCCGCTGCCCGCCGCGCTCGCCGGCGTCGCGGCCGCCGCGGCCACGGGCACGCTCACGGGCGCGG
TGACGGTCGGCTGGCGGATTCCGTCGTTCATCGTGTCGCTCGGCGTGCTCGAGGCGGCGCGCGGCGTCGCGTATCAATTG
ACGAATTCGCGCACCGCTTACATCGGCGACGCGTTCGACTTCCTGTCGAACCCGATCGCGCTCGGCATCTCGCCCGCGTT
CCTGATCGCGGTCGCGGTGATGATCGTCGCGCAGTTCGTGCTCGCGCGCACGGTGTTCGGCCGCTACCTCGTCGGCATCG
GCACGAACGAAGAGGCGGTGCGACTGGCCGGGGTCAACCCGCGCCCGTATAAAATCATTGTTTTCGCGCTGATGGGCGCG
CTAGCGGGGCTCGCCGCGCTGTTTCAGATCTCCCGGCTCGAAGCCGCCGATCCGAACGCGGGCGCGGGCCTCGAGCTGCA
GGTGATCGCGGCCGTCGTGATCGGCGGCACGAGCCTGATGGGCGGCCGCGGCTCGGTGGTCAGCACGTTCTTCGGCGTGT
CGATCATCTCGGTGCTCGCGGCGGGGCTCGCGCAGATCGGCGCGAACGAACCGACCAAGCGCATCATCACCGGCGCCGTG
ATCGTCGTGGCCGTCGTGCTCGACACGTATCGCAGCCGGCGCGCGCGGGGATAG

Upstream 100 bases:

>100_bases
CCGCCCGGCGGCGCGAGGTCCGCCGCGTGACGCGCGACGGGCCGCGCACGGCGCGCGGCCCACTCCCAATCGAGGCAGCA
ACACACAGGATTTCTTCACG

Downstream 100 bases:

>100_bases
CAAAGAACAACGAACCAGAGAGAAACGGAATGGCGACGATCAAGGATGTGGCGGCCATCGCCGGCGTATCGTTCACGACG
GTATCGCACGTGGTCAACAA

Product: putative ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MNHRSIDRNADAPSGPAGTVAAKPAGVRLGLSNYVGLALALLALIALFSVLSSHFLTYDTFSTIANQIPDLVVLSVGMTF
VLIIAGIDLSVGSVLALAASVVSVAALRGQWPPLPAALAGVAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
LAGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVSIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRARG

Sequences:

>Translated_337_residues
MNHRSIDRNADAPSGPAGTVAAKPAGVRLGLSNYVGLALALLALIALFSVLSSHFLTYDTFSTIANQIPDLVVLSVGMTF
VLIIAGIDLSVGSVLALAASVVSVAALRGQWPPLPAALAGVAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
LAGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVSIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRARG
>Mature_337_residues
MNHRSIDRNADAPSGPAGTVAAKPAGVRLGLSNYVGLALALLALIALFSVLSSHFLTYDTFSTIANQIPDLVVLSVGMTF
VLIIAGIDLSVGSVLALAASVVSVAALRGQWPPLPAALAGVAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
LAGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVSIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRARG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=38.8157894736842, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=33.0097087378641, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1790524, Length=315, Percent_Identity=32.6984126984127, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI145693152, Length=267, Percent_Identity=30.3370786516854, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87082395, Length=253, Percent_Identity=34.7826086956522, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=42.3357664233577, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693214, Length=250, Percent_Identity=31.2, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787793, Length=283, Percent_Identity=28.2685512367491, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788471, Length=328, Percent_Identity=29.8780487804878, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787794, Length=323, Percent_Identity=24.7678018575851, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34320; Mature: 34320

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHRSIDRNADAPSGPAGTVAAKPAGVRLGLSNYVGLALALLALIALFSVLSSHFLTYDT
CCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSTIANQIPDLVVLSVGMTFVLIIAGIDLSVGSVLALAASVVSVAALRGQWPPLPAALAG
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQLTNSRTAYIGDAFDFLSNPIA
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCCE
LGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHH
LAGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVSIISVLA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
AGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRARG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNHRSIDRNADAPSGPAGTVAAKPAGVRLGLSNYVGLALALLALIALFSVLSSHFLTYDT
CCCCCCCCCCCCCCCCCCCEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSTIANQIPDLVVLSVGMTFVLIIAGIDLSVGSVLALAASVVSVAALRGQWPPLPAALAG
HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VAAAAATGTLTGAVTVGWRIPSFIVSLGVLEAARGVAYQLTNSRTAYIGDAFDFLSNPIA
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCCE
LGISPAFLIAVAVMIVAQFVLARTVFGRYLVGIGTNEEAVRLAGVNPRPYKIIVFALMGA
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHHH
LAGLAALFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVVSTFFGVSIISVLA
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
AGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRARG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]