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The map label for this gene is pyrF [H]

Identifier: 126453904

GI number: 126453904

Start: 3385924

End: 3386751

Strand: Reverse

Name: pyrF [H]

Synonym: BURPS1106A_3481

Alternate gene names: 126453904

Gene position: 3386751-3385924 (Counterclockwise)

Preceding gene: 126454779

Following gene: 126452534

Centisome position: 84.91

GC content: 68.6

Gene sequence:

>828_bases
ATGTCCTCCACGCCTACCTTCATCGAATCGCTGCGCACCGCCTGGCAGCGCACGAATTCGCTGCTGTGCGTCGGCCTCGA
TCCCGAGCCGACCAAGTTTCCCGCGCACCTCGAGAACCAGCCCGACGCGATCTTCGATTTCTGCCGCGAGATCGTCGACG
CGACCGCGCCGTTCGCGAGCGCGTTCAAGCCGCAGATCGCATACTTCGCCGCGCATCGCGCGGAGGACCAGCTCGAGCGG
CTGATCGCGCACATCCATCTGCAGCACCCCGGCCTGCCCGTGATCCTCGACGCGAAGCGCGGCGACATCGGCAGCACCGC
CGAGCAATACGCGCGCGAGGCGTTCGAGCGCTATCGCGCGGATGCGGTCACGGTCAATCCGTACATGGGTTTCGATTCGA
TCGAGCCGTATCTCGAGTACGAGGACAAGGGCGTGGTCGTGCTGTGCCGCACGTCGAATCCGGGCGGCTCGGATCTGCAG
TTCCTCGAGACGGGGGGGCGGCCGCTCTATCAGGTCGTCGCCGATCTCGCGGCGAGCCAATGGAATGCGAAGACGGGGCA
GCTCGCGCTCGTCGTCGGCGCGACGTTCCCGAGGGAGATCGAAATCGTGCGCGGGATCGTCGGCGACATGCCGCTCCTGA
TTCCCGGCATCGGCGCGCAGGGCGGCGACGTCGCCGCGACCGTCGCCGCGGGCCGCACGGCCGACGGCGCCGGCATGATG
ATCAACTCGTCGCGCGCGATCCTGTACGCGAGCCGCGGCGACGACTTCGCCGACGCGGCCGCGCGCACCGCCGAGCGTAC
CCGCGACGCGATCAACGCGCATCGCTGA

Upstream 100 bases:

>100_bases
GTAGCGGCGCGGCCGGCGCCGGCCGTGCGCAGTCGCGAGCGCCCGTCGCGACGCGGGTAAAATACGCGCCTTCCCAACCG
CCAAGCCGCGAGTGAGCGCC

Downstream 100 bases:

>100_bases
GCGCGGCCCGCCGCATCCCGCGACGCCTCGGCACGCGATGCCGGGCGCCGTCCGCCGCCGTTGATTCGATGCGGTTGATT
CGATGCCGTTGGTTCGACGC

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSSTPTFIESLRTAWQRTNSLLCVGLDPEPTKFPAHLENQPDAIFDFCREIVDATAPFASAFKPQIAYFAAHRAEDQLER
LIAHIHLQHPGLPVILDAKRGDIGSTAEQYAREAFERYRADAVTVNPYMGFDSIEPYLEYEDKGVVVLCRTSNPGGSDLQ
FLETGGRPLYQVVADLAASQWNAKTGQLALVVGATFPREIEIVRGIVGDMPLLIPGIGAQGGDVAATVAAGRTADGAGMM
INSSRAILYASRGDDFADAAARTAERTRDAINAHR

Sequences:

>Translated_275_residues
MSSTPTFIESLRTAWQRTNSLLCVGLDPEPTKFPAHLENQPDAIFDFCREIVDATAPFASAFKPQIAYFAAHRAEDQLER
LIAHIHLQHPGLPVILDAKRGDIGSTAEQYAREAFERYRADAVTVNPYMGFDSIEPYLEYEDKGVVVLCRTSNPGGSDLQ
FLETGGRPLYQVVADLAASQWNAKTGQLALVVGATFPREIEIVRGIVGDMPLLIPGIGAQGGDVAATVAAGRTADGAGMM
INSSRAILYASRGDDFADAAARTAERTRDAINAHR
>Mature_274_residues
SSTPTFIESLRTAWQRTNSLLCVGLDPEPTKFPAHLENQPDAIFDFCREIVDATAPFASAFKPQIAYFAAHRAEDQLERL
IAHIHLQHPGLPVILDAKRGDIGSTAEQYAREAFERYRADAVTVNPYMGFDSIEPYLEYEDKGVVVLCRTSNPGGSDLQF
LETGGRPLYQVVADLAASQWNAKTGQLALVVGATFPREIEIVRGIVGDMPLLIPGIGAQGGDVAATVAAGRTADGAGMMI
NSSRAILYASRGDDFADAAARTAERTRDAINAHR

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR018089
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 29764; Mature: 29633

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00156 OMPDECASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTPTFIESLRTAWQRTNSLLCVGLDPEPTKFPAHLENQPDAIFDFCREIVDATAPFAS
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
AFKPQIAYFAAHRAEDQLERLIAHIHLQHPGLPVILDAKRGDIGSTAEQYAREAFERYRA
HHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
DAVTVNPYMGFDSIEPYLEYEDKGVVVLCRTSNPGGSDLQFLETGGRPLYQVVADLAASQ
CEEEECCCCCCCCCCHHEEECCCCEEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHC
WNAKTGQLALVVGATFPREIEIVRGIVGDMPLLIPGIGAQGGDVAATVAAGRTADGAGMM
CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEE
INSSRAILYASRGDDFADAAARTAERTRDAINAHR
EECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSTPTFIESLRTAWQRTNSLLCVGLDPEPTKFPAHLENQPDAIFDFCREIVDATAPFAS
CCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
AFKPQIAYFAAHRAEDQLERLIAHIHLQHPGLPVILDAKRGDIGSTAEQYAREAFERYRA
HHCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC
DAVTVNPYMGFDSIEPYLEYEDKGVVVLCRTSNPGGSDLQFLETGGRPLYQVVADLAASQ
CEEEECCCCCCCCCCHHEEECCCCEEEEEECCCCCCCCCCEECCCCCHHHHHHHHHHHHC
WNAKTGQLALVVGATFPREIEIVRGIVGDMPLLIPGIGAQGGDVAATVAAGRTADGAGMM
CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCEE
INSSRAILYASRGDDFADAAARTAERTRDAINAHR
EECCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA