| Definition | Burkholderia pseudomallei 1106a chromosome I, complete genome. |
|---|---|
| Accession | NC_009076 |
| Length | 3,988,455 |
Click here to switch to the map view.
The map label for this gene is 126453902
Identifier: 126453902
GI number: 126453902
Start: 1531855
End: 1533279
Strand: Direct
Name: 126453902
Synonym: BURPS1106A_1579
Alternate gene names: NA
Gene position: 1531855-1533279 (Clockwise)
Preceding gene: 126454545
Following gene: 126455138
Centisome position: 38.41
GC content: 70.25
Gene sequence:
>1425_bases TTGAAGCTGGGTGGCGGCACCGTTCTCGGCACGTTGCTCGCCGCATGCGGGGGCGGTGGCGGGGCGGACGCAGCCGCCGC CGCGCCGCAGCAGCCGCCGCCCGCGGGGCCGAGCTCGAGCGCGAACGTCGCGATGACGCTGCCGGCCGACGCGCCGCGCA TCGCTCGCGATTTCGCGGGGCTCAGCATCGAAAAGGCGGCGTTGAGCTATCCGCTGCTGAGCGGCGAGAACGGCAACATG GTCGGCCTGTTCAACCGGCTCGGCGCCGGCGTGTTGCGCATCGGCGGCAATAGCAGCGACGCGTCCGGCTGGCAGCGCAC CGGTCCGGACGAGACGTCGGGCGTCATCACGCCCGCCGCCGTGGACCGGCTCGCGAGCTTCGTTCGGGCTTGCCGCTGGC GCGTGATCTACGGGCTCAATTTCGTCGGCAACGACCCCGCGACGATCGCCGACGAAGCCGCGTATGCGGCCCAAGCGCTG GGCGTCCAGCTCGCGGGCTTCGAGATCGGCAACGAGCCCGATCTCTACGCGCAGCATGGCCTCGCGCCGAACGCGAACAC CTATCCGGGCTTCGTGAGCCGCTGGACCACATTCGCGAATGCGATCCGGGCGGCGGTGCCCGATGCGGTGTTCACGGGCC CGGCGACCGCGTGGAACTATCAGCGTTACACCGTGCCGTTCGCAAGCGATGCAGCGGGCTTGGTGTCGTTGCTGACGCAG CACCACTACCGCAACCCCGATAGCGCGACGATCGAGGCGATGCTGAGCCCCGATCCGAGCCTCGCGCCGATGCTGCAAGC GTTGCAGGGTGCGGCGAGCGCGCGCGGCATCGGCTTTCGTCTCGCGGAGACGAACAGCTATTGGGGCGGCGGCAAGCCGG GCGTGAGCGATGCGCACGCATCCGCGCTCTGGGTGATCAACTTCCTGTTCGCCGTGGCGCAAGGGGGCGCTTCGGGCGTG AACCTGCATACCGGCGGCGGAGCGTCGTATTCGGCGATCAAGACGAACAAGACCGCCGGGACGGTCGCGGCGATCGGGCC GGAGTACTACGGCATCTATCTGTTCAACCAGGCCGCGGGCGGGCGACTGATGCAAACCCGCGTCGATTCGGCGGGTACCA CGCTGTTCGCGCATGCGGTCGCGGCCGACGGCGGCGGCGTGCGCCTCATCCTCGTGAATACCGATGCGAACAGCGGCTAT GACGTCGCCGTCGATTGCAGCAGCGTGCCGAACGCGCGCGCCGGCATCGTCACGACGCTCGGCGGGCCGTCGCTCGGCAG CCTGACGGGCACGCAGATCGACGGCGCGACGTTTGCGCTCGACGGGAGCGGGGCGCCGCAGGGCGGCCGGCCGGTCGCTT GCGTGAACGGCGTGCTCGGCGTGCATGTCGCGTCCGCGAGCGCGTTGCTGGTCGACTTCGCGTGA
Upstream 100 bases:
>100_bases GGCACGCAAGGCGTTCGTTCTAGAAAGAGTTCGTTACAACGACAGGAGACATAGCATGCCCCACGAATCCCCCCCGTCGT CGAAATCGCGGCGCCTTGTT
Downstream 100 bases:
>100_bases GCGGGACGCACGCCGTGCGGCGCGCACGCGCGAACCGAGACGTCTCGCAGCCATCGCTCGCCCATCGGCGCAACGCGGCG GGCATGCTGCTGCGCGACAA
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MKLGGGTVLGTLLAACGGGGGADAAAAAPQQPPPAGPSSSANVAMTLPADAPRIARDFAGLSIEKAALSYPLLSGENGNM VGLFNRLGAGVLRIGGNSSDASGWQRTGPDETSGVITPAAVDRLASFVRACRWRVIYGLNFVGNDPATIADEAAYAAQAL GVQLAGFEIGNEPDLYAQHGLAPNANTYPGFVSRWTTFANAIRAAVPDAVFTGPATAWNYQRYTVPFASDAAGLVSLLTQ HHYRNPDSATIEAMLSPDPSLAPMLQALQGAASARGIGFRLAETNSYWGGGKPGVSDAHASALWVINFLFAVAQGGASGV NLHTGGGASYSAIKTNKTAGTVAAIGPEYYGIYLFNQAAGGRLMQTRVDSAGTTLFAHAVAADGGGVRLILVNTDANSGY DVAVDCSSVPNARAGIVTTLGGPSLGSLTGTQIDGATFALDGSGAPQGGRPVACVNGVLGVHVASASALLVDFA
Sequences:
>Translated_474_residues MKLGGGTVLGTLLAACGGGGGADAAAAAPQQPPPAGPSSSANVAMTLPADAPRIARDFAGLSIEKAALSYPLLSGENGNM VGLFNRLGAGVLRIGGNSSDASGWQRTGPDETSGVITPAAVDRLASFVRACRWRVIYGLNFVGNDPATIADEAAYAAQAL GVQLAGFEIGNEPDLYAQHGLAPNANTYPGFVSRWTTFANAIRAAVPDAVFTGPATAWNYQRYTVPFASDAAGLVSLLTQ HHYRNPDSATIEAMLSPDPSLAPMLQALQGAASARGIGFRLAETNSYWGGGKPGVSDAHASALWVINFLFAVAQGGASGV NLHTGGGASYSAIKTNKTAGTVAAIGPEYYGIYLFNQAAGGRLMQTRVDSAGTTLFAHAVAADGGGVRLILVNTDANSGY DVAVDCSSVPNARAGIVTTLGGPSLGSLTGTQIDGATFALDGSGAPQGGRPVACVNGVLGVHVASASALLVDFA >Mature_474_residues MKLGGGTVLGTLLAACGGGGGADAAAAAPQQPPPAGPSSSANVAMTLPADAPRIARDFAGLSIEKAALSYPLLSGENGNM VGLFNRLGAGVLRIGGNSSDASGWQRTGPDETSGVITPAAVDRLASFVRACRWRVIYGLNFVGNDPATIADEAAYAAQAL GVQLAGFEIGNEPDLYAQHGLAPNANTYPGFVSRWTTFANAIRAAVPDAVFTGPATAWNYQRYTVPFASDAAGLVSLLTQ HHYRNPDSATIEAMLSPDPSLAPMLQALQGAASARGIGFRLAETNSYWGGGKPGVSDAHASALWVINFLFAVAQGGASGV NLHTGGGASYSAIKTNKTAGTVAAIGPEYYGIYLFNQAAGGRLMQTRVDSAGTTLFAHAVAADGGGVRLILVNTDANSGY DVAVDCSSVPNARAGIVTTLGGPSLGSLTGTQIDGATFALDGSGAPQGGRPVACVNGVLGVHVASASALLVDFA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47724; Mature: 47724
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLGGGTVLGTLLAACGGGGGADAAAAAPQQPPPAGPSSSANVAMTLPADAPRIARDFAG CCCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCC LSIEKAALSYPLLSGENGNMVGLFNRLGAGVLRIGGNSSDASGWQRTGPDETSGVITPAA CEEEHHHHCCCEEECCCCCEEEEHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEECHHH VDRLASFVRACRWRVIYGLNFVGNDPATIADEAAYAAQALGVQLAGFEIGNEPDLYAQHG HHHHHHHHHHHCEEEEEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHCC LAPNANTYPGFVSRWTTFANAIRAAVPDAVFTGPATAWNYQRYTVPFASDAAGLVSLLTQ CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHH HHYRNPDSATIEAMLSPDPSLAPMLQALQGAASARGIGFRLAETNSYWGGGKPGVSDAHA HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHH SALWVINFLFAVAQGGASGVNLHTGGGASYSAIKTNKTAGTVAAIGPEYYGIYLFNQAAG HHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCEEEEECCCEEEEEEEECCCC GRLMQTRVDSAGTTLFAHAVAADGGGVRLILVNTDANSGYDVAVDCSSVPNARAGIVTTL CEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEC GGPSLGSLTGTQIDGATFALDGSGAPQGGRPVACVNGVLGVHVASASALLVDFA CCCCCCCCCCCEECCEEEEECCCCCCCCCCCCHHHCCCHHEEECCCCEEEEECC >Mature Secondary Structure MKLGGGTVLGTLLAACGGGGGADAAAAAPQQPPPAGPSSSANVAMTLPADAPRIARDFAG CCCCCHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCC LSIEKAALSYPLLSGENGNMVGLFNRLGAGVLRIGGNSSDASGWQRTGPDETSGVITPAA CEEEHHHHCCCEEECCCCCEEEEHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEECHHH VDRLASFVRACRWRVIYGLNFVGNDPATIADEAAYAAQALGVQLAGFEIGNEPDLYAQHG HHHHHHHHHHHCEEEEEEEEEECCCCCCHHHHHHHHHHHHCEEEEEEECCCCCCHHHHCC LAPNANTYPGFVSRWTTFANAIRAAVPDAVFTGPATAWNYQRYTVPFASDAAGLVSLLTQ CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHH HHYRNPDSATIEAMLSPDPSLAPMLQALQGAASARGIGFRLAETNSYWGGGKPGVSDAHA HHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHH SALWVINFLFAVAQGGASGVNLHTGGGASYSAIKTNKTAGTVAAIGPEYYGIYLFNQAAG HHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCCEEEEECCCEEEEEEEECCCC GRLMQTRVDSAGTTLFAHAVAADGGGVRLILVNTDANSGYDVAVDCSSVPNARAGIVTTL CEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEC GGPSLGSLTGTQIDGATFALDGSGAPQGGRPVACVNGVLGVHVASASALLVDFA CCCCCCCCCCCEECCEEEEECCCCCCCCCCCCHHHCCCHHEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA