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The map label for this gene is skp [H]

Identifier: 126453885

GI number: 126453885

Start: 2435595

End: 2436101

Strand: Reverse

Name: skp [H]

Synonym: BURPS1106A_2483

Alternate gene names: 126453885

Gene position: 2436101-2435595 (Counterclockwise)

Preceding gene: 126452465

Following gene: 126453222

Centisome position: 61.08

GC content: 66.86

Gene sequence:

>507_bases
GTGATGTGCGCGCTGGCGCTCGCGGCCGCGCTCGGCGCGACGGCCGCGCGCGCGCAGGACGTCGCGCGCATCGCGGCCGT
CAATTCGGATCGGATCCTGCGCGAGTCCGCGCCGGCGAAGGCCGCGCAAACGAAGCTCGAGGCCGAGTTCGCGAAGCGCG
ACAAGGATCTGCAGGACATGGCCGCGCGCCTGAAATCGATGTCCGATGCGCTCGACCGGAACGGCCCGACGATGTCGGCC
AACGATCGCGCGCAGAAGCAGCGCGACCTCGCGCAGCTCGACACCGATTTCCAGCGCAAGCAGCGCGAGTTCCGCGAGGA
TCTGAACCAGCGCCGCAACGAGGAACTCGCCGCGGTGCTCGACAAGGCGAACAAGGTGATCAAGCAGATCGCCGAGCAGC
AGAACTACGATCTGATCGTGCAGGAAGCGGTGTACGTGAGCCCGCGCATCGACATCACCGACAAGGTGCTGAAGGCGCTC
GCATCGCCTTCGAGCCTGTCGAACTGA

Upstream 100 bases:

>100_bases
CAGAAATTCCAGTTCCAGATCGGGACGGCGTTCTGATCGATCAGGCACTGACTACAGCATCGAGAGGGTAATCTTGCTAA
CCGGTAAGTTTTCGAAACGA

Downstream 100 bases:

>100_bases
ACGGAGCGAACGTCGAATGGCATTGACGCTTGAGGCGCTCGCCGCGCGGTTCGGCGGCGAGATCGTCGGCGACGGCCGCT
GCGAGGTAGGCGCTCTCGCG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MMCALALAAALGATAARAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKSMSDALDRNGPTMSA
NDRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKAL
ASPSSLSN

Sequences:

>Translated_168_residues
MMCALALAAALGATAARAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKSMSDALDRNGPTMSA
NDRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKAL
ASPSSLSN
>Mature_168_residues
MMCALALAAALGATAARAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDMAARLKSMSDALDRNGPTMSA
NDRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVLDKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKAL
ASPSSLSN

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18599; Mature: 18599

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCALALAAALGATAARAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDM
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
AARLKSMSDALDRNGPTMSANDRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASPSSLSN
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMCALALAAALGATAARAQDVARIAAVNSDRILRESAPAKAAQTKLEAEFAKRDKDLQDM
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
AARLKSMSDALDRNGPTMSANDRAQKQRDLAQLDTDFQRKQREFREDLNQRRNEELAAVL
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKANKVIKQIAEQQNYDLIVQEAVYVSPRIDITDKVLKALASPSSLSN
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12886019 [H]