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The map label for this gene is abgR [H]

Identifier: 126453744

GI number: 126453744

Start: 1533546

End: 1534523

Strand: Direct

Name: abgR [H]

Synonym: BURPS1106A_1581

Alternate gene names: 126453744

Gene position: 1533546-1534523 (Clockwise)

Preceding gene: 126455138

Following gene: 126452560

Centisome position: 38.45

GC content: 66.67

Gene sequence:

>978_bases
ATGGCCGCTGAATGGATGGGCTGCGACCGGTTTCGCGCAAATTCGATGAAAGTATCGCTGCGTCATTTACGTGCGTTCGT
GGCGGTGGCTCGGGAAGGCAGCTTCACGGCCGCCGCGGGCGCGCTGTGCCTCACGCAGTCGACGCTGACGAAGACGATCC
GCGAGTTCGAACAGGCGCTCGGCGTGCACGTGTTCGAGCGCAATACGCGGCGCATCGCGCTCACGCCGTACGGCGCGGCG
TTCCTCGTCGACGCGGTGAGAATCCTGAACGACCTCGATCTCGCGCTCGACGGCGTCAACCAGCAACTCCTCGGAAACAG
CGGCACCGTACGCGTCGCAAGCGGCCTCGCGTTCGCGTCGACGGTCATGCCGTGCGTGATCCGGGCCTTGCACGCGCAGG
AGCCCGGCATTCACGTGGACTTGCTCGACGACACGAGTGGCGGCGTGATCCGGCGGATCGAATCCGGCGAGGTCGACGTG
GGGATCGGCTCGTACGTCGGCATGGCCGGCAACGCGCTGAGCGTGAGGCGCCTCCTGAGCGCGCGTCTGGGCGTGCTGTT
TCCGGTCGGCTATCCGAAGATTCCGTCGCGGCCCACGCTCGCCAGCCTGAACGAGATTCCGATCCTGCGCGACTCGGACG
AGTCGAGCATCGCCGCCGCGTTCCGGCAGCAGGCGCCCGATCTCTGGGAGCGGATGAGGCGAAAGGTGTCCGTCACGAAT
CTCGATTTGCAGCTCGCGCTGGTTCGCGAGGGCATCGGCGCGTGCATCGTGTCGGCATTGGCGGCGTCGCATCCGTCCGC
GCGGGGGATGCCGTATCGCCTGCTCGTCGAGCCGGAAATGACGCGGGACGTCTATGTGTTCACTCGCCGCGACGTGTCGC
TGCTGCCGGCCGCCGCGCGGTTCGTCGACATTCTGATGAACGTGCTTCCGTCGATCGATTTCGCCGAGGGCGTCGAACTC
GCTTGCGACGGCGCGTGA

Upstream 100 bases:

>100_bases
GCGCGGCGCGATGCTAGTATCAAGAACTCGGGACAAGGTAAATTCATGGCCGGTTGGACGTTTGGCGGTGCAATGAGCGC
GGTGTCGCAAAGGCGGGCTC

Downstream 100 bases:

>100_bases
ACGCCACGCGCCGCGAGCGTGCGGCGCGACAGCCCTTGCCGGCCGTTGTCGAACCACCGCGCGTGCGTCGAAGCGCGGCG
AACCGCCGTGCGCCGCGTTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MAAEWMGCDRFRANSMKVSLRHLRAFVAVAREGSFTAAAGALCLTQSTLTKTIREFEQALGVHVFERNTRRIALTPYGAA
FLVDAVRILNDLDLALDGVNQQLLGNSGTVRVASGLAFASTVMPCVIRALHAQEPGIHVDLLDDTSGGVIRRIESGEVDV
GIGSYVGMAGNALSVRRLLSARLGVLFPVGYPKIPSRPTLASLNEIPILRDSDESSIAAAFRQQAPDLWERMRRKVSVTN
LDLQLALVREGIGACIVSALAASHPSARGMPYRLLVEPEMTRDVYVFTRRDVSLLPAAARFVDILMNVLPSIDFAEGVEL
ACDGA

Sequences:

>Translated_325_residues
MAAEWMGCDRFRANSMKVSLRHLRAFVAVAREGSFTAAAGALCLTQSTLTKTIREFEQALGVHVFERNTRRIALTPYGAA
FLVDAVRILNDLDLALDGVNQQLLGNSGTVRVASGLAFASTVMPCVIRALHAQEPGIHVDLLDDTSGGVIRRIESGEVDV
GIGSYVGMAGNALSVRRLLSARLGVLFPVGYPKIPSRPTLASLNEIPILRDSDESSIAAAFRQQAPDLWERMRRKVSVTN
LDLQLALVREGIGACIVSALAASHPSARGMPYRLLVEPEMTRDVYVFTRRDVSLLPAAARFVDILMNVLPSIDFAEGVEL
ACDGA
>Mature_324_residues
AAEWMGCDRFRANSMKVSLRHLRAFVAVAREGSFTAAAGALCLTQSTLTKTIREFEQALGVHVFERNTRRIALTPYGAAF
LVDAVRILNDLDLALDGVNQQLLGNSGTVRVASGLAFASTVMPCVIRALHAQEPGIHVDLLDDTSGGVIRRIESGEVDVG
IGSYVGMAGNALSVRRLLSARLGVLFPVGYPKIPSRPTLASLNEIPILRDSDESSIAAAFRQQAPDLWERMRRKVSVTNL
DLQLALVREGIGACIVSALAASHPSARGMPYRLLVEPEMTRDVYVFTRRDVSLLPAAARFVDILMNVLPSIDFAEGVELA
CDGA

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=184, Percent_Identity=29.3478260869565, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693105, Length=300, Percent_Identity=27, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI87081904, Length=198, Percent_Identity=31.3131313131313, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI157672245, Length=296, Percent_Identity=25.3378378378378, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788748, Length=147, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788887, Length=249, Percent_Identity=26.5060240963855, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=162, Percent_Identity=32.0987654320988, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787879, Length=149, Percent_Identity=30.8724832214765, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787589, Length=122, Percent_Identity=33.6065573770492, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788296, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI2367136, Length=251, Percent_Identity=24.3027888446215, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=131, Percent_Identity=28.2442748091603, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788626, Length=162, Percent_Identity=29.6296296296296, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35101; Mature: 34970

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAEWMGCDRFRANSMKVSLRHLRAFVAVAREGSFTAAAGALCLTQSTLTKTIREFEQAL
CCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GVHVFERNTRRIALTPYGAAFLVDAVRILNDLDLALDGVNQQLLGNSGTVRVASGLAFAS
CEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEECCHHHHH
TVMPCVIRALHAQEPGIHVDLLDDTSGGVIRRIESGEVDVGIGSYVGMAGNALSVRRLLS
HHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCEEECCCHHHCCCCCHHHHHHHHH
ARLGVLFPVGYPKIPSRPTLASLNEIPILRDSDESSIAAAFRQQAPDLWERMRRKVSVTN
HHHCEEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHCCCCC
LDLQLALVREGIGACIVSALAASHPSARGMPYRLLVEPEMTRDVYVFTRRDVSLLPAAAR
CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHH
FVDILMNVLPSIDFAEGVELACDGA
HHHHHHHHHCCCCCCCCCCEEECCC
>Mature Secondary Structure 
AAEWMGCDRFRANSMKVSLRHLRAFVAVAREGSFTAAAGALCLTQSTLTKTIREFEQAL
CCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GVHVFERNTRRIALTPYGAAFLVDAVRILNDLDLALDGVNQQLLGNSGTVRVASGLAFAS
CEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEECCHHHHH
TVMPCVIRALHAQEPGIHVDLLDDTSGGVIRRIESGEVDVGIGSYVGMAGNALSVRRLLS
HHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCEEECCCHHHCCCCCHHHHHHHHH
ARLGVLFPVGYPKIPSRPTLASLNEIPILRDSDESSIAAAFRQQAPDLWERMRRKVSVTN
HHHCEEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCHHHHHHHHHHCCCCC
LDLQLALVREGIGACIVSALAASHPSARGMPYRLLVEPEMTRDVYVFTRRDVSLLPAAAR
CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHH
FVDILMNVLPSIDFAEGVELACDGA
HHHHHHHHHCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]