Click here to switch to the map view.

The map label for this gene is ygdL [H]

Identifier: 126453730

GI number: 126453730

Start: 890270

End: 891136

Strand: Direct

Name: ygdL [H]

Synonym: BURPS1106A_0905

Alternate gene names: 126453730

Gene position: 890270-891136 (Clockwise)

Preceding gene: 126455086

Following gene: 126453908

Centisome position: 22.32

GC content: 70.36

Gene sequence:

>867_bases
ATGTCTCGTACCGACGCCATTGCGACGCCTCACGATGTTACTCCGCAGCCATCCGGCGAGCTTGACGCGGATCGCGCCCG
GCGCTTCGGCGGCGTCGCCCGGCTCTACGGCGCCGATGCGCTCGCCGCGTTCGAGCGCGCGCGCGTCGCGGTGATCGGCA
TCGGCGGCGTCGGCTCGTGGGCGGCCGAGGCGCTCGCGCGCAGCGCCGTGGGGGAACTGACCCTGATCGATCTCGACAAC
GTCGCCGAAAGCAACACGAACCGGCAGATCCATGCGCTCGACGGCAATTACGGCAAGCCGAAGGTCGACGCGATGGCCGA
GCGGATCGCGCTCATCGATCCGGCGTGCCGCGTCGTGAAGATCGAGGATTTCGTCGAGCCGGACAATCTCGACGCACTGC
TCGGCGGCGGCTTCGACTACATCGTCGACGCGATCGACAGCGTGCGCACGAAGGTCGCGCTGATCGCGTGGTGCGTCGCG
CGCGCGCAGCCGCTCGTGACGGTCGGCGGCGCGGGCGGCCAGCTCGATCCGACCCGCATCCGCATTGACGATCTCGCGCA
GACGATCCAGGACCCGCTGCTGTCGAAGGTGCGCGCGCAACTGCGCAAGCAGCACGGTTTCCCGCGCGGGCCGAAAGCCC
GGTTCAAGGTGAGCGCCGTCTATTCGGACGAGCCGCTGATCTATCCGGAGGCGGCCGTGTGCGACGTCGACGATGTCGCG
ATGCACACCGCAACCGACGCGCAGGCGCCGGGGCCGACCGGGCTCAATTGCGCGGGCTTCGGCTCGAGCGTGTGCGTGAC
CGCGAGCTTCGGGTTCGCGGCGGCCGCGCATGCGCTGCGTGCGCTCGCCGCGCGGGCGGGGCGCTAA

Upstream 100 bases:

>100_bases
CGAAGGTGGAAAAAACCTGCGTCGCAGTGCTTCGGTGCGTGTTTGCCGCCGGCCGATCAGGCAAAATAGCGGGCTATCCG
TTGCCTTTCGATCAGCTTGT

Downstream 100 bases:

>100_bases
CGCAGGCGTGGCCGCGCGCCCGTTCGCGGCGCGGCGGCGGTCGATTCGCGCATGCCGGCATGCGCATGGGCGCCGCGCGG
GGGCGGCCGAATCGCCGCGC

Product: HesA/MoeB/ThiF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSRTDAIATPHDVTPQPSGELDADRARRFGGVARLYGADALAAFERARVAVIGIGGVGSWAAEALARSAVGELTLIDLDN
VAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVVKIEDFVEPDNLDALLGGGFDYIVDAIDSVRTKVALIAWCVA
RAQPLVTVGGAGGQLDPTRIRIDDLAQTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAVCDVDDVA
MHTATDAQAPGPTGLNCAGFGSSVCVTASFGFAAAAHALRALAARAGR

Sequences:

>Translated_288_residues
MSRTDAIATPHDVTPQPSGELDADRARRFGGVARLYGADALAAFERARVAVIGIGGVGSWAAEALARSAVGELTLIDLDN
VAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVVKIEDFVEPDNLDALLGGGFDYIVDAIDSVRTKVALIAWCVA
RAQPLVTVGGAGGQLDPTRIRIDDLAQTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAVCDVDDVA
MHTATDAQAPGPTGLNCAGFGSSVCVTASFGFAAAAHALRALAARAGR
>Mature_287_residues
SRTDAIATPHDVTPQPSGELDADRARRFGGVARLYGADALAAFERARVAVIGIGGVGSWAAEALARSAVGELTLIDLDNV
AESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVVKIEDFVEPDNLDALLGGGFDYIVDAIDSVRTKVALIAWCVAR
AQPLVTVGGAGGQLDPTRIRIDDLAQTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAVCDVDDVAM
HTATDAQAPGPTGLNCAGFGSSVCVTASFGFAAAAHALRALAARAGR

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=265, Percent_Identity=52.4528301886792, Blast_Score=278, Evalue=3e-76,
Organism=Escherichia coli, GI1787048, Length=136, Percent_Identity=33.0882352941176, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87082356, Length=131, Percent_Identity=32.824427480916, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321790, Length=247, Percent_Identity=27.1255060728745, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6322825, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24582879, Length=134, Percent_Identity=32.8358208955224, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 30226; Mature: 30094

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTDAIATPHDVTPQPSGELDADRARRFGGVARLYGADALAAFERARVAVIGIGGVGSW
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEEECCCCHH
AAEALARSAVGELTLIDLDNVAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVVK
HHHHHHHHHHCCEEEEECHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
IEDFVEPDNLDALLGGGFDYIVDAIDSVRTKVALIAWCVARAQPLVTVGGAGGQLDPTRI
EHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
RIDDLAQTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAVCDVDDVA
EHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEECCCHHCCCHHHHH
MHTATDAQAPGPTGLNCAGFGSSVCVTASFGFAAAAHALRALAARAGR
HHCCCCCCCCCCCCCEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRTDAIATPHDVTPQPSGELDADRARRFGGVARLYGADALAAFERARVAVIGIGGVGSW
CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCEEEEEEECCCCHH
AAEALARSAVGELTLIDLDNVAESNTNRQIHALDGNYGKPKVDAMAERIALIDPACRVVK
HHHHHHHHHHCCEEEEECHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
IEDFVEPDNLDALLGGGFDYIVDAIDSVRTKVALIAWCVARAQPLVTVGGAGGQLDPTRI
EHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEE
RIDDLAQTIQDPLLSKVRAQLRKQHGFPRGPKARFKVSAVYSDEPLIYPEAAVCDVDDVA
EHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEECCCHHCCCHHHHH
MHTATDAQAPGPTGLNCAGFGSSVCVTASFGFAAAAHALRALAARAGR
HHCCCCCCCCCCCCCEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]