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The map label for this gene is tse [H]

Identifier: 126453706

GI number: 126453706

Start: 1655102

End: 1657045

Strand: Direct

Name: tse [H]

Synonym: BURPS1106A_1696

Alternate gene names: 126453706

Gene position: 1655102-1657045 (Clockwise)

Preceding gene: 126454861

Following gene: 126453910

Centisome position: 41.5

GC content: 69.65

Gene sequence:

>1944_bases
ATGTGTCTCATCGGCAATGTCCGGCCAACTTTTGTCGCAAATCAGACAATTCCGCGCGCGACCGTTGCGCGCATTCGAAC
GCCGTCCGCGCGTTTAGCGTTTGCGCGGCGCACGGGCGCGCATCGGGCCCGGCATGGCGGGTTTCACCCCACTCAAGAAA
AAAAGGCGCCTGCCGTAGAACCCGTCGAGACGTATCGCGCGAGCGCCGACGGTCAAGCCGAAGCCGCCTTTTCGGCCGCA
GCATCAGATCAGAACGGGGATCCATCGATGAAAGGAGTATCGCTGCACGGCAAGCATTTCCTGCTCGACGACGCGACGGG
AAACCGCGGGCGCACGCCCAAGCCCGGCAAGCCGCGCCGCGCGCGCCGCGCATGGTCGGTGAAGACGACGCTGCGCGCCG
CGTTCGCGCTGCTGCTCGTCGGCACGCTTGCCGTGGGCCTGTTTTCGCTCGCCCAGATCAGCCGGCTCAACAGCTCGATC
AGGTCCGTGTACGAGCAGGGGCATGTCGCGAGCCGCGCGGCCGAGGAAGTGCGTGCGTCGGTGCTGCGCGCGAGCCGCGC
GCAGAAGATGCTGATCACGGCGACGACCGCGAAGGAGCGCGACGAACTCGGCGCGGACATCGACAAGGGGCTCGCCGCGA
TCGGCGCCGAACTCGCGACGCTGCAGCGGCACGCGGACGGCGCGGCCGACGATGCCGCGCGCCTGAAGGCGTTCGGCGCA
GCGGTGGGCGCGTGGAGTGCGCATCTGCGCGATTTCGTGAGGCTCGTGCGCGAGCAGCCGCTCGATCTGTCGCAAATGAG
CTGGCAGGTGGGCTCGCAGGATGTGTCGCTGCTCGTCGAGACGGGCAAGCTCGAGAAGCTCGTCGACGGGCTCGTCGATG
CGCGCGGCGACGCGTCGAAGGCGACGCTCGACGCATCGGGCGCGATATTTCGCGAATCGTTCGCGATGCTCGCCGCGATG
ACCGCGGCGCTCGTCGTGCTCGCGTTCGTGATCGCCGCGTGGGTCGTGCGGCGGCTCGGCGCGCAACTGGGCGGCGAGCC
CGCGTATGCGAAGGAGATCGCGGTCAGCATTTCGCGCGGCGACCTGTCGAACGTGATCAGGCTCGACACGCGCGATCACG
ACAGCATGCTGCACGCGCTGCGCGACATGCAGGAAGGCCTGGCCGGCACGGTGCGCGAGATCTCCGCGAGCGCCGAGGCG
ATCGCGTCCGCGGCGGGCGAGATCGCGATGGGCAATCTCGATCTGTCGCAGCGCACCGAGCAGCAGGCGGTCGCGCTCGA
GCGCACCGCGACGAGCATGGGGCAACTGACGTCGACCGTCCACCAGAACGCGGAGAACGCGCGGCAGGCGAGCACGCTCG
CGGCGAACGCGTCGTCGGTGGCCGAGGCGGGCGGCACGGTGGTCGGCCGCGTGGTCTCGACGATGAACGAGATCGACGAG
AGCGCGAAGAGCATTCGCGACATCATCGGCGTGATCGAGAGCATCGCGTTCCAGACCAACATCCTCGCGTTGAACGCGGC
CGTCGAGGCGGCGCGCGCGGGCGAGGAAGGGCGCGGGTTCTCGGTCGTCGCGAGCGAGGTGCGCTCGCTCGCGCAGCGCT
CGGCGAGCGCCGCGAAGGAGATCAAGGCGCTGATCGGCGCGTCGGTCGAGCGGGTCGCGAACGGCGCGGTGCTCGCGCAG
GACGCCGGGCGCACGATGGACGAGGTCGTGCGCGCGGTCAAGCGCGTGACCGACATCATGGGCGAGATCTCCGCCGCGTC
GAGTGAGCAGAGCGCGGGCATCGACGCGATCGAGCGCGCGGTCACGCAGATGGACGCCGGCACGCAGCAGAACGCGGCGC
TCGTCGAGGAAGCGGCCGCCGCCGCGCGCTCGCTCGACGAGCAGGCGCAGATGCTCAAGGAGATGGTCGGGCGTTTTCAC
TTGCCCGCGCACGCGGCGGGCTGA

Upstream 100 bases:

>100_bases
CGAGGCTGGTTTCCATAGGAATGCGAGTGTCTCGGAAGGGGCGCTGCGTGCCCCGGCAGGGCACGGCACGTGTTTTTCTT
TGATGGGTCAACGAAGTGTA

Downstream 100 bases:

>100_bases
GCGGACGCGACGCGGCCGGCGTGCCGCAGCGCGCCGCAGCGGCACGCGCCGCGCGCTCGGCGGACGAGCGGACGAGCGCG
CATCGCCGGCGTGCTTTCCG

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 647; Mature: 647

Protein sequence:

>647_residues
MCLIGNVRPTFVANQTIPRATVARIRTPSARLAFARRTGAHRARHGGFHPTQEKKAPAVEPVETYRASADGQAEAAFSAA
ASDQNGDPSMKGVSLHGKHFLLDDATGNRGRTPKPGKPRRARRAWSVKTTLRAAFALLLVGTLAVGLFSLAQISRLNSSI
RSVYEQGHVASRAAEEVRASVLRASRAQKMLITATTAKERDELGADIDKGLAAIGAELATLQRHADGAADDAARLKAFGA
AVGAWSAHLRDFVRLVREQPLDLSQMSWQVGSQDVSLLVETGKLEKLVDGLVDARGDASKATLDASGAIFRESFAMLAAM
TAALVVLAFVIAAWVVRRLGAQLGGEPAYAKEIAVSISRGDLSNVIRLDTRDHDSMLHALRDMQEGLAGTVREISASAEA
IASAAGEIAMGNLDLSQRTEQQAVALERTATSMGQLTSTVHQNAENARQASTLAANASSVAEAGGTVVGRVVSTMNEIDE
SAKSIRDIIGVIESIAFQTNILALNAAVEAARAGEEGRGFSVVASEVRSLAQRSASAAKEIKALIGASVERVANGAVLAQ
DAGRTMDEVVRAVKRVTDIMGEISAASSEQSAGIDAIERAVTQMDAGTQQNAALVEEAAAAARSLDEQAQMLKEMVGRFH
LPAHAAG

Sequences:

>Translated_647_residues
MCLIGNVRPTFVANQTIPRATVARIRTPSARLAFARRTGAHRARHGGFHPTQEKKAPAVEPVETYRASADGQAEAAFSAA
ASDQNGDPSMKGVSLHGKHFLLDDATGNRGRTPKPGKPRRARRAWSVKTTLRAAFALLLVGTLAVGLFSLAQISRLNSSI
RSVYEQGHVASRAAEEVRASVLRASRAQKMLITATTAKERDELGADIDKGLAAIGAELATLQRHADGAADDAARLKAFGA
AVGAWSAHLRDFVRLVREQPLDLSQMSWQVGSQDVSLLVETGKLEKLVDGLVDARGDASKATLDASGAIFRESFAMLAAM
TAALVVLAFVIAAWVVRRLGAQLGGEPAYAKEIAVSISRGDLSNVIRLDTRDHDSMLHALRDMQEGLAGTVREISASAEA
IASAAGEIAMGNLDLSQRTEQQAVALERTATSMGQLTSTVHQNAENARQASTLAANASSVAEAGGTVVGRVVSTMNEIDE
SAKSIRDIIGVIESIAFQTNILALNAAVEAARAGEEGRGFSVVASEVRSLAQRSASAAKEIKALIGASVERVANGAVLAQ
DAGRTMDEVVRAVKRVTDIMGEISAASSEQSAGIDAIERAVTQMDAGTQQNAALVEEAAAAARSLDEQAQMLKEMVGRFH
LPAHAAG
>Mature_647_residues
MCLIGNVRPTFVANQTIPRATVARIRTPSARLAFARRTGAHRARHGGFHPTQEKKAPAVEPVETYRASADGQAEAAFSAA
ASDQNGDPSMKGVSLHGKHFLLDDATGNRGRTPKPGKPRRARRAWSVKTTLRAAFALLLVGTLAVGLFSLAQISRLNSSI
RSVYEQGHVASRAAEEVRASVLRASRAQKMLITATTAKERDELGADIDKGLAAIGAELATLQRHADGAADDAARLKAFGA
AVGAWSAHLRDFVRLVREQPLDLSQMSWQVGSQDVSLLVETGKLEKLVDGLVDARGDASKATLDASGAIFRESFAMLAAM
TAALVVLAFVIAAWVVRRLGAQLGGEPAYAKEIAVSISRGDLSNVIRLDTRDHDSMLHALRDMQEGLAGTVREISASAEA
IASAAGEIAMGNLDLSQRTEQQAVALERTATSMGQLTSTVHQNAENARQASTLAANASSVAEAGGTVVGRVVSTMNEIDE
SAKSIRDIIGVIESIAFQTNILALNAAVEAARAGEEGRGFSVVASEVRSLAQRSASAAKEIKALIGASVERVANGAVLAQ
DAGRTMDEVVRAVKRVTDIMGEISAASSEQSAGIDAIERAVTQMDAGTQQNAALVEEAAAAARSLDEQAQMLKEMVGRFH
LPAHAAG

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=288, Percent_Identity=59.7222222222222, Blast_Score=281, Evalue=1e-76,
Organism=Escherichia coli, GI1788194, Length=347, Percent_Identity=49.2795389048991, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI2367378, Length=300, Percent_Identity=55.6666666666667, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1787690, Length=266, Percent_Identity=57.8947368421053, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1789453, Length=336, Percent_Identity=36.9047619047619, Blast_Score=188, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 67975; Mature: 67975

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLIGNVRPTFVANQTIPRATVARIRTPSARLAFARRTGAHRARHGGFHPTQEKKAPAVE
CEEECCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCC
PVETYRASADGQAEAAFSAAASDQNGDPSMKGVSLHGKHFLLDDATGNRGRTPKPGKPRR
HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCHH
ARRAWSVKTTLRAAFALLLVGTLAVGLFSLAQISRLNSSIRSVYEQGHVASRAAEEVRAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
VLRASRAQKMLITATTAKERDELGADIDKGLAAIGAELATLQRHADGAADDAARLKAFGA
HHHHHHHHHEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AVGAWSAHLRDFVRLVREQPLDLSQMSWQVGSQDVSLLVETGKLEKLVDGLVDARGDASK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
ATLDASGAIFRESFAMLAAMTAALVVLAFVIAAWVVRRLGAQLGGEPAYAKEIAVSISRG
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCC
DLSNVIRLDTRDHDSMLHALRDMQEGLAGTVREISASAEAIASAAGEIAMGNLDLSQRTE
CHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHH
QQAVALERTATSMGQLTSTVHQNAENARQASTLAANASSVAEAGGTVVGRVVSTMNEIDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHH
SAKSIRDIIGVIESIAFQTNILALNAAVEAARAGEEGRGFSVVASEVRSLAQRSASAAKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IKALIGASVERVANGAVLAQDAGRTMDEVVRAVKRVTDIMGEISAASSEQSAGIDAIERA
HHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHH
VTQMDAGTQQNAALVEEAAAAARSLDEQAQMLKEMVGRFHLPAHAAG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MCLIGNVRPTFVANQTIPRATVARIRTPSARLAFARRTGAHRARHGGFHPTQEKKAPAVE
CEEECCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCC
PVETYRASADGQAEAAFSAAASDQNGDPSMKGVSLHGKHFLLDDATGNRGRTPKPGKPRR
HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCHH
ARRAWSVKTTLRAAFALLLVGTLAVGLFSLAQISRLNSSIRSVYEQGHVASRAAEEVRAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
VLRASRAQKMLITATTAKERDELGADIDKGLAAIGAELATLQRHADGAADDAARLKAFGA
HHHHHHHHHEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AVGAWSAHLRDFVRLVREQPLDLSQMSWQVGSQDVSLLVETGKLEKLVDGLVDARGDASK
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
ATLDASGAIFRESFAMLAAMTAALVVLAFVIAAWVVRRLGAQLGGEPAYAKEIAVSISRG
CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCC
DLSNVIRLDTRDHDSMLHALRDMQEGLAGTVREISASAEAIASAAGEIAMGNLDLSQRTE
CHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHH
QQAVALERTATSMGQLTSTVHQNAENARQASTLAANASSVAEAGGTVVGRVVSTMNEIDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHH
SAKSIRDIIGVIESIAFQTNILALNAAVEAARAGEEGRGFSVVASEVRSLAQRSASAAKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IKALIGASVERVANGAVLAQDAGRTMDEVVRAVKRVTDIMGEISAASSEQSAGIDAIERA
HHHHHHHHHHHHHCCCEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHH
VTQMDAGTQQNAALVEEAAAAARSLDEQAQMLKEMVGRFHLPAHAAG
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]