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The map label for this gene is ycgR1 [H]

Identifier: 126453685

GI number: 126453685

Start: 269069

End: 269827

Strand: Direct

Name: ycgR1 [H]

Synonym: BURPS1106A_0287

Alternate gene names: 126453685

Gene position: 269069-269827 (Clockwise)

Preceding gene: 126454563

Following gene: 126451511

Centisome position: 6.75

GC content: 67.85

Gene sequence:

>759_bases
ATGAATACCGAACAGTCGACGAGTCCGGCCGCGAGTGCCGCCGCGCATTCCGGCCACGATTACGGCCGCCGCAATCCGCT
CGAGATCGGCGTGCAGTTGCGCAACCTCGTCAATCGCGGCGATTTCCTGACCGTCCAGTACCAGGGCGGCCAGCTCGTCA
CCCGCATTCTCGATGTCGACGTCGGCGCGCGGACCTTCGTATTCGACTGGGGTGCGCTTGCCGATCAGAACGCCGGCATT
CTCGCCGCGCCGCGCTGCGTGTTCGACGCGTCGCCGGACGGCGTGCGCGTCGAGTTCTCGACCGCTACCCCGCGCGAAAC
CCGTTACGAGAACCTGCCCGCGTTCGAAGCCGATTTCCCCGACGTGCTGTACTGCATGCAGCGCCGCGAATATTTCCGGG
TCGACGCGCCGATCCTCGATCCGTACGTATGCCGCGGCAGGCTGCCCGACGGCGAGACCTTCCTGTTCGAAGTGCACAAC
CTGTCGCTCGGCGGCCTCGGGCTGCGCACGAGCGACGACCGCGTGGCGTCGCTCGAGCCCGGCATGACGCTGCCCGACGT
CGAGCTGAACCTGAACGGCCACGGGATGCTGTCGCTCGACCTGCAACTCGTGTCGCACCGCGCGAGCGAGACGCCGAGCG
GCGCGCGCCGCTACCAGCTCGGCTTTCGCTTCGTGTCGCTGCCGGGCAGCGCCGAGAACACGCTGCAGCGCATCATCACG
CAGCTCGAGATGAAGCGCCGGCAACTCGCGCGCGCCTGA

Upstream 100 bases:

>100_bases
TGCCGCTAAACGTGAGAGACCAGCGATCGGGCGGATCACGCCCGTCCATAACGCGCCCCCGAAATCCGCCGGGCGCATAG
AGATAAAATACCGGCAAGCC

Downstream 100 bases:

>100_bases
CGAAAGCTGCCCGCGCGCGACCGACGCCGCCGCGCCGGGGCGGTGAACGCGCGCGCAAACGTTCATGGCGGCGCTCGCGC
GCCGCATTCGCATTTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1 [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNTEQSTSPAASAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVDVGARTFVFDWGALADQNAGI
LAAPRCVFDASPDGVRVEFSTATPRETRYENLPAFEADFPDVLYCMQRREYFRVDAPILDPYVCRGRLPDGETFLFEVHN
LSLGGLGLRTSDDRVASLEPGMTLPDVELNLNGHGMLSLDLQLVSHRASETPSGARRYQLGFRFVSLPGSAENTLQRIIT
QLEMKRRQLARA

Sequences:

>Translated_252_residues
MNTEQSTSPAASAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVDVGARTFVFDWGALADQNAGI
LAAPRCVFDASPDGVRVEFSTATPRETRYENLPAFEADFPDVLYCMQRREYFRVDAPILDPYVCRGRLPDGETFLFEVHN
LSLGGLGLRTSDDRVASLEPGMTLPDVELNLNGHGMLSLDLQLVSHRASETPSGARRYQLGFRFVSLPGSAENTLQRIIT
QLEMKRRQLARA
>Mature_252_residues
MNTEQSTSPAASAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVDVGARTFVFDWGALADQNAGI
LAAPRCVFDASPDGVRVEFSTATPRETRYENLPAFEADFPDVLYCMQRREYFRVDAPILDPYVCRGRLPDGETFLFEVHN
LSLGGLGLRTSDDRVASLEPGMTLPDVELNLNGHGMLSLDLQLVSHRASETPSGARRYQLGFRFVSLPGSAENTLQRIIT
QLEMKRRQLARA

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=240, Percent_Identity=32.9166666666667, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 27941; Mature: 27941

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEQSTSPAASAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVD
CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHCC
VGARTFVFDWGALADQNAGILAAPRCVFDASPDGVRVEFSTATPRETRYENLPAFEADFP
CCCEEEEEECCCCCCCCCCEEECCEEEECCCCCCEEEEEECCCCCCHHHCCCCCCCCCCH
DVLYCMQRREYFRVDAPILDPYVCRGRLPDGETFLFEVHNLSLGGLGLRTSDDRVASLEP
HHHHHHHHHHHEEECCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCC
GMTLPDVELNLNGHGMLSLDLQLVSHRASETPSGARRYQLGFRFVSLPGSAENTLQRIIT
CCCCCCEEEEECCCEEEEEHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH
QLEMKRRQLARA
HHHHHHHHHHCC
>Mature Secondary Structure
MNTEQSTSPAASAAAHSGHDYGRRNPLEIGVQLRNLVNRGDFLTVQYQGGQLVTRILDVD
CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHCC
VGARTFVFDWGALADQNAGILAAPRCVFDASPDGVRVEFSTATPRETRYENLPAFEADFP
CCCEEEEEECCCCCCCCCCEEECCEEEECCCCCCEEEEEECCCCCCHHHCCCCCCCCCCH
DVLYCMQRREYFRVDAPILDPYVCRGRLPDGETFLFEVHNLSLGGLGLRTSDDRVASLEP
HHHHHHHHHHHEEECCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCC
GMTLPDVELNLNGHGMLSLDLQLVSHRASETPSGARRYQLGFRFVSLPGSAENTLQRIIT
CCCCCCEEEEECCCEEEEEHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHH
QLEMKRRQLARA
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA