Click here to switch to the map view.

The map label for this gene is yjcC [C]

Identifier: 126453626

GI number: 126453626

Start: 924363

End: 925631

Strand: Reverse

Name: yjcC [C]

Synonym: BURPS1106A_0943

Alternate gene names: 126453626

Gene position: 925631-924363 (Counterclockwise)

Preceding gene: 126452379

Following gene: 126452751

Centisome position: 23.21

GC content: 69.5

Gene sequence:

>1269_bases
ATGATCGACATCGATCCTCCCAGCTTCCAGTCGCCGCGCCCGATCGCGGGCGACGACGGCAACCGGCGCACCGTGCTGTA
CGGCGACTACACCGTGTTCAGCGTGTTCCAGCCGGTCTTCTCGGTGTCGCATCGCCGTGCGATCGGCTATCACGCGTCGC
TGCGCGCGCACGATTCGCAGGGCAACCAGGTGCCCTCGCACGAGGTGTTCACACAGGCCGCGCGCCGCGGCGATCTGCTC
GAACTCGGCCGCCTCGCCGAATCGCTGCACCTGGGCAACTTCCACACGTTCGACAGTCACGACGAATGGCTCTTCCTGAG
CCTGCATCCCGCCGCGCTGATGGACACCGTCTACGGCGACGCGCTCCTCGCGAACCTGAAGGCACTCGGGCTGCCGCCGC
AGCGCGTCGTGCTCGAAGTGCCCGAGCAGGCGGGCGGCGAGACGCCGCGCTTCGCGGCGATCGTCGACGGCCTGCGCAAG
GCGGGTTTCCTGATCGCGCTCGGCGGCTTCGGCGCGAAGCACTCGAACATCGATCGCGTCTGGCACCTGCACCCGGACAT
CGTCACGCTCGATCGCGGCATCCTCGCGCAGGCAAGCGAGCATTCGCATCTCGAGCGCGTGCTGCCCGGCCTCGTGTCGC
TGCTGCACGAGTCGGGGCAGCTCGTGCTGATGGGCGGCATCACGACCGAGCGCGAAGCGCTGATCGCGCTCGAATGCGAC
GTCGATTTCGTACAAGGGCAATACTTCGCCGGGCCGAGCGTCGAGCCGGTGCAGCCGCAGGCCGCGGCGGGCGTCATGGA
TACGCTGTCGGCCGCGCTTCGGCTGCGCGTCGCCGAGCGCACGCGCGCGCAGCAAGCGCGCCTCGCGCCGTACGTCGCCG
CGCTGCTGCAGGCGAGCGCGCTGCTGCGCGAAGGCCGTGACCTCACCGAAGCGTCGAAGGAGCTGCTCGAGCTGCCCGAG
GCGGCGCGCTGCTTCCTGCTCGACGCGTCGGGCCGTCAGATCGGCGACAACGTGCTGCCGCGCGTGCATGCATCGCAGCG
CGCGAAGCGCTTCAGCCCGCTGCTGCACTCGGAAGGCGCGAGCTGGGAACGCCGGCCGTACTTCATCGAGGCGATGCGCG
TGCCGGGGCGCGCGCATTTCACGCCGCCCTATCTGTCGATCAATGAAGCGCACCTGTGCGTGACGGCGTCGATCGCGACG
CCCGCGGTGCAAGGCATGCAGGTGCTCTGCGTCGACATCAACTGGGAAGCCGCCGCGCACCGCGACTGA

Upstream 100 bases:

>100_bases
CGCGCGCAGCCGCGGCGTGCTGCCGCAGCTTTTTGCGCACGTTTCTTGCTCGTCTATTCTGTAGGTAAACTGACGGTTCC
CAAGCAGCCGAATCATGAGC

Downstream 100 bases:

>100_bases
ATCCCGTTCGCCGCCGCGGCGGCCCAGGCCGCCGTATGCAACGCCCGGGCATCCGCGGCCCGTCGGTCGTCGGTCGTCGG
CGCGGCCGGCCGTTCGCGCC

Product: cyclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: EAL Domain-Containing Protein; Diguanylate Cyclase/Phosphodiesterase; EAL Domain Protein; Sensor Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; Signal Transduction Protein; Cyclic Diguanylate Phosphodiesterase; Signaling Protein

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MIDIDPPSFQSPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRAHDSQGNQVPSHEVFTQAARRGDLL
ELGRLAESLHLGNFHTFDSHDEWLFLSLHPAALMDTVYGDALLANLKALGLPPQRVVLEVPEQAGGETPRFAAIVDGLRK
AGFLIALGGFGAKHSNIDRVWHLHPDIVTLDRGILAQASEHSHLERVLPGLVSLLHESGQLVLMGGITTEREALIALECD
VDFVQGQYFAGPSVEPVQPQAAAGVMDTLSAALRLRVAERTRAQQARLAPYVAALLQASALLREGRDLTEASKELLELPE
AARCFLLDASGRQIGDNVLPRVHASQRAKRFSPLLHSEGASWERRPYFIEAMRVPGRAHFTPPYLSINEAHLCVTASIAT
PAVQGMQVLCVDINWEAAAHRD

Sequences:

>Translated_422_residues
MIDIDPPSFQSPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRAHDSQGNQVPSHEVFTQAARRGDLL
ELGRLAESLHLGNFHTFDSHDEWLFLSLHPAALMDTVYGDALLANLKALGLPPQRVVLEVPEQAGGETPRFAAIVDGLRK
AGFLIALGGFGAKHSNIDRVWHLHPDIVTLDRGILAQASEHSHLERVLPGLVSLLHESGQLVLMGGITTEREALIALECD
VDFVQGQYFAGPSVEPVQPQAAAGVMDTLSAALRLRVAERTRAQQARLAPYVAALLQASALLREGRDLTEASKELLELPE
AARCFLLDASGRQIGDNVLPRVHASQRAKRFSPLLHSEGASWERRPYFIEAMRVPGRAHFTPPYLSINEAHLCVTASIAT
PAVQGMQVLCVDINWEAAAHRD
>Mature_422_residues
MIDIDPPSFQSPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRAHDSQGNQVPSHEVFTQAARRGDLL
ELGRLAESLHLGNFHTFDSHDEWLFLSLHPAALMDTVYGDALLANLKALGLPPQRVVLEVPEQAGGETPRFAAIVDGLRK
AGFLIALGGFGAKHSNIDRVWHLHPDIVTLDRGILAQASEHSHLERVLPGLVSLLHESGQLVLMGGITTEREALIALECD
VDFVQGQYFAGPSVEPVQPQAAAGVMDTLSAALRLRVAERTRAQQARLAPYVAALLQASALLREGRDLTEASKELLELPE
AARCFLLDASGRQIGDNVLPRVHASQRAKRFSPLLHSEGASWERRPYFIEAMRVPGRAHFTPPYLSINEAHLCVTASIAT
PAVQGMQVLCVDINWEAAAHRD

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=22.0833333333333, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46163; Mature: 46163

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIDPPSFQSPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRAHDSQ
CCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEEECCC
GNQVPSHEVFTQAARRGDLLELGRLAESLHLGNFHTFDSHDEWLFLSLHPAALMDTVYGD
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHH
ALLANLKALGLPPQRVVLEVPEQAGGETPRFAAIVDGLRKAGFLIALGGFGAKHSNIDRV
HHHHHHHHHCCCHHHHEEECCHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCEE
WHLHPDIVTLDRGILAQASEHSHLERVLPGLVSLLHESGQLVLMGGITTEREALIALECD
EEECCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECC
VDFVQGQYFAGPSVEPVQPQAAAGVMDTLSAALRLRVAERTRAQQARLAPYVAALLQASA
CCEECCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLREGRDLTEASKELLELPEAARCFLLDASGRQIGDNVLPRVHASQRAKRFSPLLHSEGA
HHHCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCHHCCCCHHHHHHHHHCHHHHCCCC
SWERRPYFIEAMRVPGRAHFTPPYLSINEAHLCVTASIATPAVQGMQVLCVDINWEAAAH
CCCCCCEEEEEEECCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCEEEEEEECCCCCCC
RD
CC
>Mature Secondary Structure
MIDIDPPSFQSPRPIAGDDGNRRTVLYGDYTVFSVFQPVFSVSHRRAIGYHASLRAHDSQ
CCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCEEEEEEEECCC
GNQVPSHEVFTQAARRGDLLELGRLAESLHLGNFHTFDSHDEWLFLSLHPAALMDTVYGD
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHHH
ALLANLKALGLPPQRVVLEVPEQAGGETPRFAAIVDGLRKAGFLIALGGFGAKHSNIDRV
HHHHHHHHHCCCHHHHEEECCHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCEE
WHLHPDIVTLDRGILAQASEHSHLERVLPGLVSLLHESGQLVLMGGITTEREALIALECD
EEECCCEEEECCCHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECC
VDFVQGQYFAGPSVEPVQPQAAAGVMDTLSAALRLRVAERTRAQQARLAPYVAALLQASA
CCEECCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLREGRDLTEASKELLELPEAARCFLLDASGRQIGDNVLPRVHASQRAKRFSPLLHSEGA
HHHCCCCHHHHHHHHHHCCCHHEEEEEECCCCCCCCHHCCCCHHHHHHHHHCHHHHCCCC
SWERRPYFIEAMRVPGRAHFTPPYLSINEAHLCVTASIATPAVQGMQVLCVDINWEAAAH
CCCCCCEEEEEEECCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCEEEEEEECCCCCCC
RD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA