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The map label for this gene is rpe [H]

Identifier: 126453569

GI number: 126453569

Start: 3488843

End: 3489529

Strand: Direct

Name: rpe [H]

Synonym: BURPS1106A_3581

Alternate gene names: 126453569

Gene position: 3488843-3489529 (Clockwise)

Preceding gene: 126452695

Following gene: 126454711

Centisome position: 87.47

GC content: 66.81

Gene sequence:

>687_bases
ATGACGCAATTCCGCATCGCCCCCAGCATTCTGTCGGCCGATTTCGCGCGGCTCGGCGAAGAAGTCCGCAATGTCGTCGC
CGCCGGCGCCGACTGGATCCACTTCGACGTGATGGACAACCACTACGTGCCGAACCTGACGATCGGCCCGCTCGTCTGCG
AGGCGATCCGCCCGCACGTGCAGGTGCCGATCGACGTGCACCTGATGGTGCGTCCGGTCGACCGGATCGTGCCGGATTTC
GCGAAGGCGGGCGCGAACCTGATCAGCTTTCACCCGGAAGCGTCGGATCACATCGACCGCACGCTCGGCCTGATCCGCGA
TCACGGCTGCAAGGCGGGCCTCGTGTTCAACCCGGCGACGCCGCTCAATTACCTCGATCACGTGATGGATCGCGTCGATC
TCGTGCTGATCATGTCGGTGAACCCCGGCTTCGGCGGCCAGTCGTTCATTCCCGAGGCGCTCAACAAGCTGCGCGAAGCC
CGCGCGCGCATCGACGCGTACACCGCGCGCACCGGCCGCGAGATTCATCTGGAGATCGACGGCGGCGTGAAGGCCGAGAA
CATCGCCGAGATCGCCGCGGCGGGCGCCGATACGTTCGTCGCGGGCTCGGCGATCTTCGGCAAGCCCGACTATCGGCAGG
TGATCGGCGAGATGCGCGACGCGCTCGCCACCGTCGGGCGCGCGTGA

Upstream 100 bases:

>100_bases
TTCTGCTTGATGAGGCCCCGGCCCGCAACCGGCCGGCGCGTGCCGCGGCGGTAGAATGACGTTTTTCCGTCTTGCAACGC
ACCCCACGCGCCCTCCTCTC

Downstream 100 bases:

>100_bases
GCACGATGACGACGTCGCCTCTCAATGGCGCGCCGCGCATCGAAGCGGCGCTCATCGATCTCGACGGCACGATGGTCGAT
ACCGCAGACGATTTCACGGC

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTQFRIAPSILSADFARLGEEVRNVVAAGADWIHFDVMDNHYVPNLTIGPLVCEAIRPHVQVPIDVHLMVRPVDRIVPDF
AKAGANLISFHPEASDHIDRTLGLIRDHGCKAGLVFNPATPLNYLDHVMDRVDLVLIMSVNPGFGGQSFIPEALNKLREA
RARIDAYTARTGREIHLEIDGGVKAENIAEIAAAGADTFVAGSAIFGKPDYRQVIGEMRDALATVGRA

Sequences:

>Translated_228_residues
MTQFRIAPSILSADFARLGEEVRNVVAAGADWIHFDVMDNHYVPNLTIGPLVCEAIRPHVQVPIDVHLMVRPVDRIVPDF
AKAGANLISFHPEASDHIDRTLGLIRDHGCKAGLVFNPATPLNYLDHVMDRVDLVLIMSVNPGFGGQSFIPEALNKLREA
RARIDAYTARTGREIHLEIDGGVKAENIAEIAAAGADTFVAGSAIFGKPDYRQVIGEMRDALATVGRA
>Mature_227_residues
TQFRIAPSILSADFARLGEEVRNVVAAGADWIHFDVMDNHYVPNLTIGPLVCEAIRPHVQVPIDVHLMVRPVDRIVPDFA
KAGANLISFHPEASDHIDRTLGLIRDHGCKAGLVFNPATPLNYLDHVMDRVDLVLIMSVNPGFGGQSFIPEALNKLREAR
ARIDAYTARTGREIHLEIDGGVKAENIAEIAAAGADTFVAGSAIFGKPDYRQVIGEMRDALATVGRA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=225, Percent_Identity=37.7777777777778, Blast_Score=158, Evalue=4e-39,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=37.6146788990826, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI24307923, Length=180, Percent_Identity=30.5555555555556, Blast_Score=94, Evalue=9e-20,
Organism=Escherichia coli, GI1789788, Length=227, Percent_Identity=70.0440528634361, Blast_Score=333, Evalue=7e-93,
Organism=Escherichia coli, GI1790523, Length=202, Percent_Identity=38.1188118811881, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1790754, Length=211, Percent_Identity=29.8578199052133, Blast_Score=96, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17552948, Length=222, Percent_Identity=39.6396396396396, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=241, Percent_Identity=36.5145228215768, Blast_Score=162, Evalue=4e-41,
Organism=Drosophila melanogaster, GI24586301, Length=221, Percent_Identity=36.1990950226244, Blast_Score=151, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24809; Mature: 24678

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQFRIAPSILSADFARLGEEVRNVVAAGADWIHFDVMDNHYVPNLTIGPLVCEAIRPHV
CCCEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCE
QVPIDVHLMVRPVDRIVPDFAKAGANLISFHPEASDHIDRTLGLIRDHGCKAGLVFNPAT
ECCEEEEEEEECHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCC
PLNYLDHVMDRVDLVLIMSVNPGFGGQSFIPEALNKLREARARIDAYTARTGREIHLEID
HHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GGVKAENIAEIAAAGADTFVAGSAIFGKPDYRQVIGEMRDALATVGRA
CCCCHHHHHHHHHCCCCHHEECCEEECCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQFRIAPSILSADFARLGEEVRNVVAAGADWIHFDVMDNHYVPNLTIGPLVCEAIRPHV
CCEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCE
QVPIDVHLMVRPVDRIVPDFAKAGANLISFHPEASDHIDRTLGLIRDHGCKAGLVFNPAT
ECCEEEEEEEECHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCC
PLNYLDHVMDRVDLVLIMSVNPGFGGQSFIPEALNKLREARARIDAYTARTGREIHLEID
HHHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GGVKAENIAEIAAAGADTFVAGSAIFGKPDYRQVIGEMRDALATVGRA
CCCCHHHHHHHHHCCCCHHEECCEEECCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]