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The map label for this gene is rbsB [H]

Identifier: 126453551

GI number: 126453551

Start: 1874906

End: 1875853

Strand: Direct

Name: rbsB [H]

Synonym: BURPS1106A_1920

Alternate gene names: 126453551

Gene position: 1874906-1875853 (Clockwise)

Preceding gene: 126452445

Following gene: 126453379

Centisome position: 47.01

GC content: 68.35

Gene sequence:

>948_bases
ATGATGCACACCGCCTTGTCGACGCCGGCTTCCGGCCGCCGGGCCGCCCGCGCGCTGCGCGCCGCCGCGCTTTCGCTCGC
GCTCGGCGCGGCGAGCGCCGCGCACGCGGCGCCGCTGAAGATCGGCATGACGTTCCAGGAGCTGAACAACCCGTACTTCG
TGACGATGCAAAAGGCGCTCGACGAGGCGGCCGCGTCGATCGGCGCGCAGGTGATCGTCACCGACGCGCATCACGACGTG
AGCAAGCAGGTGAGCGACGTCGAGGACATGCTGCAGAAGAAGATCGACATCCTGCTCGTGAACCCGACCGATTCGACGGG
CATCCAGTCGGCCGTCGTGTCGGCGAAGAAGGCGGGCGCCGTCGTCGTCGCGGTGGACGCGAACGCGAACGGCCCGGTCG
ACGCGTTCGTCGGCTCGAAGAATTTCGACGCGGGCGCGATGTCGTGCGACTACCTCGCGAAGGCGATCGGCGGCGGCGGC
GAAGTCGCGATCCTCGACGGCATCCCGGTCGTGCCGATTCTCGAGCGCGTGCGCGGCTGCCGCGCGGCGCTCGCGAAATT
CCCGAACGTGAGGATCGTCGACGTGCAGAACGGCAGGCAGGAGCGCGCGAGCGCGCTCGCCGTCACCGAGAACATGATCC
AGGCGCACCCGTTGCTCAAGGGCGTCTTCAGCGTCAACGACGGCGGCTCGATGGGCGCGCTGTCCGCGATCGAGGCGTCG
GGCCGCGACATCAAGCTCACGAGCGTCGACGGCGCGCCGGAGGCGATCGCGGCGATGCAGAAGCCGAACTCGAAGTTCAT
CGAGACGTCCGCGCAGTTCCCGCGCGACCAGATTCGCCTCGCGATCGGCATCGGGCTCGCGAAGAAGTGGGGCGCCAATG
TGCCGAAGGCGATTCCGGTCGACGTGAAGCGGATCGACAAGGGCAACGCGAAGACGTTCAGTTGGTGA

Upstream 100 bases:

>100_bases
CCGGCCCGCGTTCCCGAGCAATCCAGCCCAACACGCGTCGCCCGGCGCGCCGCTCGCGCGGCGCGCGGGGTGCGCGCATC
CCTAGAAAACGGAGACGACC

Downstream 100 bases:

>100_bases
GCGGCCCGCGCGACGAGGCCGACGACATGGACGAAGCGAGCGGCGCGGCGCGCGCGCCTGACGAAGCGAGCGAGGAGGCG
ATGGACACGATACTGGCGCT

Product: carbohydrate ABC transporter periplasmic sugar-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MMHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALDEAAASIGAQVIVTDAHHDV
SKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGG
EVAILDGIPVVPILERVRGCRAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEAS
GRDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVDVKRIDKGNAKTFSW

Sequences:

>Translated_315_residues
MMHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALDEAAASIGAQVIVTDAHHDV
SKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGG
EVAILDGIPVVPILERVRGCRAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEAS
GRDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVDVKRIDKGNAKTFSW
>Mature_315_residues
MMHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKALDEAAASIGAQVIVTDAHHDV
SKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGAVVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGG
EVAILDGIPVVPILERVRGCRAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEAS
GRDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPVDVKRIDKGNAKTFSW

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=291, Percent_Identity=33.6769759450172, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790526, Length=267, Percent_Identity=29.2134831460674, Blast_Score=88, Evalue=9e-19,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32726; Mature: 32726

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHCCCCEEEEHHHHH
DEAAASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGA
HHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
VVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGGEVAILDGIPVVPILERVRGC
EEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH
RAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEAS
HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCC
GRDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPV
CCEEEEEECCCCHHHHHHHCCCCCHHHHCHHHCCHHHEEEEEEECCHHHCCCCCCCCCCC
DVKRIDKGNAKTFSW
CHHCCCCCCCCCCCC
>Mature Secondary Structure
MMHTALSTPASGRRAARALRAAALSLALGAASAAHAAPLKIGMTFQELNNPYFVTMQKAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHCCCCEEEEHHHHH
DEAAASIGAQVIVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVVSAKKAGA
HHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCE
VVVAVDANANGPVDAFVGSKNFDAGAMSCDYLAKAIGGGGEVAILDGIPVVPILERVRGC
EEEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH
RAALAKFPNVRIVDVQNGRQERASALAVTENMIQAHPLLKGVFSVNDGGSMGALSAIEAS
HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHCC
GRDIKLTSVDGAPEAIAAMQKPNSKFIETSAQFPRDQIRLAIGIGLAKKWGANVPKAIPV
CCEEEEEECCCCHHHHHHHCCCCCHHHHCHHHCCHHHEEEEEEECCHHHCCCCCCCCCCC
DVKRIDKGNAKTFSW
CHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]